Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_I03
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 45 1e-05
06_03_0786 - 24579722-24580137,24580518-24580590 27 1.6
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 2.8
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 26 3.7
01_06_1093 + 34471262-34471334,34474526-34476759 26 3.7
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 26 4.8
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 26 4.8
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219... 25 6.4
06_03_0456 + 20982762-20982794,20982818-20983024 25 6.4
05_01_0032 + 217055-218074 25 6.4
01_01_0198 + 1718374-1718875,1719591-1719604 25 6.4
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374... 25 8.5
11_01_0762 + 6400052-6401845,6401977-6402609 25 8.5
03_06_0251 + 32654223-32654423,32655275-32655589 25 8.5
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 25 8.5
03_05_0444 + 24396375-24396584,24396968-24397021,24397426-243975... 25 8.5
02_03_0122 - 15491106-15491509,15492668-15492695 25 8.5
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 13 EGAFPETPAVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRERGALPGAE 192
EG+ P ++ SIL++ LG V ++FGPV P+Y VR+NS E V + A
Sbjct: 284 EGSVQHNP-LNEGSILWITESRIPLGIVDELFGPVKNPYYLVRYNSAEEVPADISAGTAV 342
Query: 193 VFIALRSDH 219
F+A +DH
Sbjct: 343 SFVAEFADH 351
>06_03_0786 - 24579722-24580137,24580518-24580590
Length = 162
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 15 GCIPGDTGCGSRQHSVLG*RSQG 83
GC GD CG R+H LG ++G
Sbjct: 55 GCGGGDCDCGHRRHDSLGRLAEG 77
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 116 TGPNTSKTFPRALAPLSKNRMLSRSTAGVSGNAPS 12
+GP T + A A MLSR +G G APS
Sbjct: 67 SGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPS 101
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 15 GCIPGDTGCGSRQHSVLG*RSQG 83
GC GD CG R+H LG ++G
Sbjct: 1057 GCGGGDRVCGHRRHGGLGRLAEG 1079
>01_06_1093 + 34471262-34471334,34474526-34476759
Length = 768
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 18 CIPGDTGCGSRQHS 59
C+PGDT C QH+
Sbjct: 541 CLPGDTSCDCAQHN 554
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 37 AVDLDSILFLDNGAKALGKV 96
A+DLD+ + DN ALGK+
Sbjct: 916 ALDLDNAMAYDNAVSALGKI 935
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 100 RKLFLEPWLRYPRTECCRDPQP 35
R++ L WLRY R E DP P
Sbjct: 158 RRVVLAAWLRYERREDEFDPMP 179
>07_03_1734 +
29120474-29120705,29120839-29120949,29121854-29121966,
29122119-29124128
Length = 821
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 72 RSQGSRKSFRRIRTRDG 122
RS G+R S RRIR+R G
Sbjct: 63 RSAGARASLRRIRSRGG 79
>06_03_0456 + 20982762-20982794,20982818-20983024
Length = 79
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 29 RHRLWISTAFCSWITEPRL*EKFSTYSDP*RSRITVCGSTR 151
RHR+W S ++ WI ++ +D S +T+ GS R
Sbjct: 13 RHRIWCSVSWEHWIRRRDEGDQKDGSADGAGSGVTLLGSPR 53
>05_01_0032 + 217055-218074
Length = 339
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 110 PNTSKTFPRALAPLSKNRMLSRSTAGVSGNAPS 12
P + P ALA +S R+L+ S VSG PS
Sbjct: 110 PGITGPIPAALANISGLRVLTISHTAVSGPIPS 142
>01_01_0198 + 1718374-1718875,1719591-1719604
Length = 171
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 27 GDTGCGSRQHSVLG*RSQG 83
GD GCG R+H LG ++G
Sbjct: 9 GDRGCGWRRHGGLGRLAEG 27
>11_06_0188 +
21036465-21036627,21036735-21036883,21037369-21037484,
21037939-21038101
Length = 196
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 58 LFLDNGAKALGKVFDVFGPVTEPHYCVR 141
++L N + +GKV ++FGP+ E + ++
Sbjct: 83 IYLQNKTQ-IGKVDEIFGPINESLFSIK 109
>11_01_0762 + 6400052-6401845,6401977-6402609
Length = 808
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 79 WLRYPRTECCRDPQPVS 29
+L+Y R +C RDP P++
Sbjct: 145 YLQYTRKKCVRDPAPLA 161
>03_06_0251 + 32654223-32654423,32655275-32655589
Length = 171
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 114 GSEYVENFS*SLGSVIQEQNAVE-IHSRCLRECTLVPN 4
G E VE S S GS + A + + RC R+C L P+
Sbjct: 4 GEEDVEASSDSGGSATRRCAACKFLRRRCSRDCVLAPH 41
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 89 PRALAPLSKNRMLSRSTAGVSGNAPS 12
P ++ L K RML AG GN PS
Sbjct: 296 PESVTALPKLRMLWAPRAGFEGNIPS 321
>03_05_0444 +
24396375-24396584,24396968-24397021,24397426-24397517,
24397610-24397685,24397838-24397900,24398002-24398094,
24398694-24398819,24398895-24398999,24399071-24399127,
24399149-24399274,24399348-24399424,24400312-24400384,
24400430-24400492
Length = 404
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 16 GAFPETPAVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRERG 174
GAF ET ++ F G G+V +V+GP + + +++ V++ G
Sbjct: 116 GAFVETFPSGCLTLDFALGGGLPKGRVVEVYGPESSGKTTLALHAIAEVQKLG 168
>02_03_0122 - 15491106-15491509,15492668-15492695
Length = 143
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 206 KAMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGP 108
+A++ + P SA R +TE+ ++ G+V GP
Sbjct: 90 RAVDPAVPPSASREAMATTEIEGSRSGGTVLGP 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,887,716
Number of Sequences: 37544
Number of extensions: 118132
Number of successful extensions: 388
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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