Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I03
         (249 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008207-1|AAH08207.1|  494|Homo sapiens hypothetical protein BC...    56   3e-08
AK096352-1|BAC04766.1|  467|Homo sapiens protein ( Homo sapiens ...    29   2.7  
AF413079-1|AAL04173.1|  876|Homo sapiens centaurin gamma3 protein.     29   2.7  
AF359283-1|AAK48932.2|  875|Homo sapiens MRIP-1 protein.               29   2.7  

>BC008207-1|AAH08207.1|  494|Homo sapiens hypothetical protein
           BC008207 protein.
          Length = 494

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +1

Query: 34  PAVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRERG-ALPGAEVFIALR 210
           P V+ ++++F  +  +A GK+F++FGPV  P Y +RFNS +H+  +G  +     F    
Sbjct: 221 PPVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSM 279

Query: 211 SDHTNYVFLAEL 246
            D T Y+F  +L
Sbjct: 280 KDFTQYIFTEKL 291


>AK096352-1|BAC04766.1|  467|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39033 fis, clone NT2RP7007842, weakly similar to
           Drosophila melanogaster Centaurin Gamma 1A (ceng1A)
           mRNA. ).
          Length = 467

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 212 LRKAMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKNRMLSRS 42
           L +A   +APG++PR+   S E + TQ  G    P+++ +     A L   R LS S
Sbjct: 23  LPRATPATAPGTSPRANGLSVERSNTQLGGGTGAPHSASS-----ASLHSERPLSSS 74


>AF413079-1|AAL04173.1|  876|Homo sapiens centaurin gamma3 protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 212 LRKAMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKNRMLSRS 42
           L +A   +APG++PR+   S E + TQ  G    P+++ +     A L   R LS S
Sbjct: 432 LPRATPATAPGTSPRANGLSVERSNTQLGGGTGAPHSASS-----ASLHSERPLSSS 483


>AF359283-1|AAK48932.2|  875|Homo sapiens MRIP-1 protein.
          Length = 875

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 212 LRKAMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKNRMLSRS 42
           L +A   +APG++PR+   S E + TQ  G    P+++ +     A L   R LS S
Sbjct: 431 LPRATPATAPGTSPRANGLSVERSNTQLGGGTGAPHSASS-----ASLHSERPLSSS 482


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,425,630
Number of Sequences: 237096
Number of extensions: 657005
Number of successful extensions: 1488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 76,859,062
effective HSP length: 60
effective length of database: 62,633,302
effective search space used: 1377932644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)