Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_I03
         (249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69360-1|CAA93283.1|  390|Caenorhabditis elegans Hypothetical pr...    48   9e-07
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    29   0.58 
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    29   0.58 
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    27   1.3  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    27   1.3  
Z35663-3|CAA84723.1|  480|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    26   4.1  
Z11505-5|CAA77589.1|  435|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U43375-7|AAA83624.1|  271|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z69360-1|CAA93283.1|  390|Caenorhabditis elegans Hypothetical
           protein F25H8.2 protein.
          Length = 390

 Score = 48.0 bits (109), Expect = 9e-07
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +1

Query: 31  TPAVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVE 156
           T  +D DS LF D    ALG+++D+FG V  P Y +RFNS E
Sbjct: 186 TEVLDFDSFLF-DQKGNALGQIYDIFGQVKNPQYVIRFNSCE 226


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 203 AMNTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFPRALAPLSKN 60
           A++T+AP S P + + ++ +++     S  G       PRAL+P   N
Sbjct: 637 AISTAAPDSRPSTASATSIISKKSSKNSTVGKFVKAPAPRALSPPDNN 684


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 207 QSYEHLRAGQRAALAHVLHRVEPHTVMRLRHGSEYVENFS 88
           QS EH+ +G      +V   ++ H V +L H S+ + + +
Sbjct: 236 QSIEHVASGSEDGFVYVYSLLDSHIVSKLEHPSKVIHSLT 275


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 189 RAGQRAALAHVLHRVEPHTVMRLRHGSEYVENFS*SLGSVIQE 61
           R    +A AHV+H  E HTV  +   S++ + F  SL SV+ +
Sbjct: 319 RKAAESAEAHVVHATEHHTVHHVVKKSKFTK-FKESLCSVLDK 360


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 189 RAGQRAALAHVLHRVEPHTVMRLRHGSEYVENFS*SLGSVIQE 61
           R    +A AHV+H  E HTV  +   S++ + F  SL SV+ +
Sbjct: 292 RKAAESAEAHVVHATEHHTVHHVVKKSKFTK-FKESLCSVLDK 333


>Z35663-3|CAA84723.1|  480|Caenorhabditis elegans Hypothetical
           protein T04A8.5 protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 228 VVGVIAAQSYEHLRAGQRAALAHVLHR 148
           + G++AA +YEHL       LA + HR
Sbjct: 4   IFGIVAAGNYEHLNVLAANGLAALQHR 30


>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 122 SVTGPNTSKTFPRALAPLSKNRM-LSRSTA 36
           S T   T KTFP+A  PL   R+  SRS +
Sbjct: 501 STTSSATVKTFPKANTPLGTKRLNYSRSVS 530


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 89  PRALAPLSKNRMLSRSTAGVSGNAPS 12
           P+ L PLS    +S S AG S +APS
Sbjct: 196 PKPLPPLSSITSISSSAAGSSISAPS 221


>Z11505-5|CAA77589.1|  435|Caenorhabditis elegans Hypothetical
           protein F59B2.8 protein.
          Length = 435

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = -3

Query: 118 SRVRIRRKLFLEP 80
           SRV+IRRKL++EP
Sbjct: 187 SRVKIRRKLWVEP 199


>Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical
           protein W10G6.2b protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 37  AVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRER 171
           A D D +  +  G+   G+V+ V    T+  Y ++  S EH+R++
Sbjct: 132 ANDFDYLTTIGKGS--FGRVYQVRHKETKKIYAMKILSKEHIRKK 174


>Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical
           protein W10G6.2a protein.
          Length = 453

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 37  AVDLDSILFLDNGAKALGKVFDVFGPVTEPHYCVRFNSVEHVRER 171
           A D D +  +  G+   G+V+ V    T+  Y ++  S EH+R++
Sbjct: 122 ANDFDYLTTIGKGS--FGRVYQVRHKETKKIYAMKILSKEHIRKK 164


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 31  TPAVDLDSILFLDNGAK 81
           +PAV LD+  +L NGAK
Sbjct: 490 SPAVSLDADFYLGNGAK 506


>Z48334-3|CAA88310.1|  471|Caenorhabditis elegans Hypothetical
           protein F10B5.3 protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 197 NTSAPGSAPRSRTCSTELNRTQ*CGSVTGPNTSKTFP 87
           NT+   S P S    TE +RTQ  GS    N++ T P
Sbjct: 189 NTTGTPSLPFSPQSDTENSRTQSEGSSPRANSTSTPP 225


>U43375-7|AAA83624.1|  271|Caenorhabditis elegans Hypothetical
           protein K09C4.4 protein.
          Length = 271

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 117 HGSEYVENFS*SLGSVIQEQN-AVEIH 40
           HG++  ENF+  L S+++E+N  +E H
Sbjct: 189 HGNDSSENFNNVLLSIVKEKNLTIESH 215


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 207 QSYEHLRAGQRAALAHVLHR---VEPHTVMRLRHGSE 106
           Q YE L A    ALAHVL R   V   T++R   G E
Sbjct: 225 QIYESLEAIHVFALAHVLKRPVVVVSDTILRNAKGEE 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,626,226
Number of Sequences: 27780
Number of extensions: 95164
Number of successful extensions: 258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)