Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H24
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   5.3  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   7.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   7.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    23   9.2  

>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 94  YFDLFNRKLCFALCQIHRI 38
           Y   FN + C+ +C I R+
Sbjct: 909 YLQKFNNETCYMICSIERL 927


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 LLLILYKNFVTSPFHFYHCTSFVTTSKLYHVNTT 319
           L++ L      S F  +H   F+TT+  Y +N+T
Sbjct: 132 LIIALDALLTVSLFGLFHHLMFLTTNYSYTINST 165


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 262 MKRRCHKILVKY*QKAAILEHCK 194
           ++RR +++L    +K  I+EHCK
Sbjct: 775 LRRRKNQVLNDLPKKTQIIEHCK 797


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 251 SPFHFYHCTSFVTTSKLYHVNTT 319
           S  +F H  S +    +YH N T
Sbjct: 208 SDIYFLHSPSIIALGAIYHTNPT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,641
Number of Sequences: 5004
Number of extensions: 19824
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)