Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H24
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0023 + 21605803-21605917,21606054-21606148,21606261-216063...    31   0.17 
01_07_0159 - 41559532-41559706,41559761-41559936                       28   2.1  
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380     27   4.9  
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524           26   8.5  

>05_05_0023 +
           21605803-21605917,21606054-21606148,21606261-21606318,
           21606458-21606652,21607001-21607080,21607182-21607247,
           21607572-21607680,21608161-21608247,21608315-21608393,
           21608490-21608622
          Length = 338

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 215 GLLLILYKNFVTSPFHFYHCTSFVTTSK-LYHV 310
           GLLL L+  F  + F FY  T FV   K LYH+
Sbjct: 201 GLLLCLFAGFAVALFMFYSITPFVLKVKFLYHI 233


>01_07_0159 - 41559532-41559706,41559761-41559936
          Length = 116

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 109 HLMLIYFDLFNRKLCFALCQIHRIT 35
           H+  I F +   KL FALC++HR++
Sbjct: 71  HVDGIIFIILKSKLYFALCKLHRVS 95


>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
          Length = 411

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 WRPFVNTLQEFCDISVSFLSLHFIC 285
           W P+ + LQ F   + S L LH  C
Sbjct: 213 WGPYQDLLQVFFHFTTSLLDLHLTC 237


>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
          Length = 651

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 266 KNETEMS---QNSCKVLTKGRHFRA 201
           KN  E+S   +N+C V + GRHFR+
Sbjct: 552 KNRAELSVHKKNTCTVKSCGRHFRS 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,274,373
Number of Sequences: 37544
Number of extensions: 107275
Number of successful extensions: 230
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)