Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H24
         (333 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03431-3|CAB57797.1|  471|Drosophila melanogaster protein ( Dros...    27   4.4  
X01472-3|CAA25703.1|  472|Drosophila melanogaster protein ( Dros...    27   4.4  
AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p pro...    27   4.4  
AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblasto...    27   4.4  
AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related p...    27   4.4  
AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA...    27   4.4  
AE014297-2602|AAN13795.1|  412|Drosophila melanogaster CG31222-P...    27   5.9  

>X03431-3|CAB57797.1|  471|Drosophila melanogaster protein (
           Drosophila melanogastertransposable element 297. ).
          Length = 471

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 149 STKTNFTHNILLISSHVDIF*SL*QETMLRVVPDSQNNHLQH 24
           ST  N+  N +LI SH+ I+ SL     +   PDS    L +
Sbjct: 224 STWINYNDNQVLIISHIPIYLSLISTIKIIPYPDSNGYQLDY 265


>X01472-3|CAA25703.1|  472|Drosophila melanogaster protein (
           Drosophila melanogastercopia-like element 17.6. ).
          Length = 472

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 149 STKTNFTHNILLISSHVDIF*SL*QETMLRVVPDSQNNHLQH 24
           ST  N+  N LLI SH+ I  SL     +   PDS    L++
Sbjct: 225 STWINYNDNQLLIISHIPINFSLINTVKIIPYPDSNGYQLEY 266


>AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p
           protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  IWHNAKHSFLLKRSKYINMR*NQ*YVVCEI 137
           IWH A+HSF L+ S+ +  R     ++C I
Sbjct: 594 IWHLAEHSFTLESSRLLRNRHLDQLLLCAI 623


>AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblastoma
           protein homologRBF2 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  IWHNAKHSFLLKRSKYINMR*NQ*YVVCEI 137
           IWH A+HSF L+ S+ +  R     ++C I
Sbjct: 594 IWHLAEHSFTLESSRLLRNRHLDQLLLCAI 623


>AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related
           protein RBF2 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  IWHNAKHSFLLKRSKYINMR*NQ*YVVCEI 137
           IWH A+HSF L+ S+ +  R     ++C I
Sbjct: 594 IWHLAEHSFTLESSRLLRNRHLDQLLLCAI 623


>AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA
           protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 48  IWHNAKHSFLLKRSKYINMR*NQ*YVVCEI 137
           IWH A+HSF L+ S+ +  R     ++C I
Sbjct: 594 IWHLAEHSFTLESSRLLRNRHLDQLLLCAI 623


>AE014297-2602|AAN13795.1|  412|Drosophila melanogaster CG31222-PA
           protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 220 KAAILEHCKEVFTFALERNK*NKKVLKLISHTTYY*FHLMLIYFDLFNRKLCFALCQIHR 41
           KAAI+    +V     E N+   K+ K+++   ++  HLM  + + F   L  A CQ+ R
Sbjct: 244 KAAIIRTNGQVGPKREEHNEQKPKLNKILTCQLWH--HLMAWHLETFGFHLKSATCQLSR 301

Query: 40  ITTYNIIL 17
           +    + L
Sbjct: 302 VAALVLAL 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,969
Number of Sequences: 53049
Number of extensions: 206442
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 735339255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)