Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H24
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   2.5  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 196 YNALKWRPFVNTLQEFCDISVSFLSLHFICDNIKTLSRKHHQN 324
           Y    W+ + +T+  F  I++ F S  F C   KT   KH  N
Sbjct: 20  YFLCSWQDYAHTMHIFAGIAIPFYSFGFHCILFKT--PKHMNN 60


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 103 MLIYFDLFNRKLCFALCQIHRITTYNII 20
           +++ + LF   + FA+C  H   +YN +
Sbjct: 134 LILLYGLFEYLILFAICDYHLNVSYNCV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,836,076
Number of Sequences: 27780
Number of extensions: 113090
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)