Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H23
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   108   3e-24
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   107   3e-24
02_01_0295 - 1973115-1973404,1974138-1974663                           29   2.6  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    28   3.4  
05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691     28   3.4  
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363...    28   4.5  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  108 bits (259), Expect = 3e-24
 Identities = 61/115 (53%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
 Frame = -3

Query: 475 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYKA 302
           ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    KA
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KA 177

Query: 301 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSAEADYAKLLAQRKKESKVRRQEEI 137
           PKIQRLVTP+ LQ                KS  A+Y KLLAQR KE + RR E +
Sbjct: 178 PKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  107 bits (258), Expect = 3e-24
 Identities = 61/115 (53%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
 Frame = -3

Query: 475 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYKA 302
           ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+YV   +R    K GK+ +    KA
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KA 177

Query: 301 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSAEADYAKLLAQRKKESKVRRQEEI 137
           PKIQRLVTP+ LQ                KS  A+Y KLLAQR KE + RR E +
Sbjct: 178 PKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/40 (35%), Positives = 27/40 (67%)
 Frame = -3

Query: 451 EVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEG 332
           ++P R+G  + +KIRKL  +K ++D++  ++K  +P K G
Sbjct: 215 KMPGRMGGTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/53 (24%), Positives = 31/53 (58%)
 Frame = -3

Query: 439 RLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLV 281
           ++ PK+A    ++ +   +DD+ R V  + +P+++  + A+   ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377


>05_03_0421 + 13768048-13768879,13769054-13769316,13775572-13775691
          Length = 404

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 463 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPA 341
           + D E P+ +  +    + K+  L  ED    +VVKRLL A
Sbjct: 165 MDDKETPQEMYDRMMILVNKIKGLGSEDMTNHFVVKRLLRA 205


>01_05_0754 +
           24933860-24934031,24936035-24936104,24936192-24936316,
           24936539-24936677,24936926-24937022,24937105-24937170,
           24937478-24937616,24938149-24938258,24938355-24938459,
           24938579-24938686
          Length = 376

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = -3

Query: 454 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKI--QRLV 281
           GE P    P+  SKI  +    +   +   V  RL  A++    +    K PK   Q+++
Sbjct: 210 GEEPYHFQPRLFSKI--IPEKSRYQVLSTKVEIRLAKAEQITWTSLDYDKKPKAVPQKII 267

Query: 280 TPVVLQXXXXXXXXXXXXXXXXKSAEADYAKLLAQRKKESKVRRQE 143
            PV+L                   ++ D+ KL A+ KKE K  + E
Sbjct: 268 PPVLLIALLLSAESAQRPSYPSSKSKKDWDKLEAEVKKEEKEEKLE 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,708
Number of Sequences: 37544
Number of extensions: 164645
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)