Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H23
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    79   2e-15
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    30   1.00 
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    28   4.0  
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    27   9.3  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 47/104 (45%), Positives = 57/104 (54%)
 Frame = -3

Query: 475 EIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPK 296
           EI GLTD  +PR+LGPKRASKIRKLFNL K DDV +YV+       +G      +  APK
Sbjct: 120 EIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPK 175

Query: 295 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSAEADYAKLLAQRKKE 164
           IQRL+TP  +                 +   A Y KLLA+  KE
Sbjct: 176 IQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 385 EDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRL 284
           +DD RRY  K L    +   N KPRYK  K   +
Sbjct: 276 DDDGRRYFCKLLKQIAQKTANPKPRYKLSKCSHI 309


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 348 YLPKRARKMQNPDTRRLKSR 289
           YL KR +KM+NP  ++L++R
Sbjct: 190 YLSKRRKKMENPAMKKLRTR 209


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
            protein Y37E11AM.1 protein.
          Length = 1037

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 406  KLFNLKKEDDVRRYVVKRLLPAKEGKENAKPRYKAPKIQRLVT 278
            KL  LKK++  +    ++LL  ++ KE+ +   K PK++ L T
Sbjct: 992  KLKELKKKEIPKESYYEKLLKRQKAKEDDEKTEKKPKLEPLDT 1034


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 358 KRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXKSAEADYA 191
           K +LP ++ KE AK     PK Q LV P+VL                  S  +DY+
Sbjct: 243 KSILPMEKKKEEAK-----PKEQELVEPLVLSEGESIDELEDFDTGLLSSGGSDYS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,998,318
Number of Sequences: 27780
Number of extensions: 135385
Number of successful extensions: 339
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)