Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H22
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   1.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   1.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   2.2  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.0  
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    25   3.0  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    23   6.9  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    23   9.1  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    23   9.1  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 160 CNVDTASLDEHPSIHSWYISGSISV*LLTNTST 62
           C++++AS+  + +   W  + S+S  + TNT++
Sbjct: 340 CSINSASMSSNTTYFYWNSTSSLSSSVFTNTTS 372


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 280 DNFDGTVR--SLSKRANVL*WSKTSLAINSTEAPSFRAAPR*CNVDTASLDEHPSIHSWY 107
           DNF+ ++R  + + R+++    + S     + +PS   AP   NVDT S+D   S+ S +
Sbjct: 224 DNFNISIRPNTTNYRSSI---QENSNGNRDSISPSAYDAPLLHNVDTQSIDGFVSVASHF 280

Query: 106 ISGS 95
            S S
Sbjct: 281 SSAS 284


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 112 SYGLRDAHLVKQCLHCINVE 171
           S G RD H  + C +C+++E
Sbjct: 287 SLGFRDIHAKEACQYCVSLE 306


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 125 LNP*LVYFRIYKRVITNEYVYVLCTLFSLVPNSCST 18
           LN  +  F +YK  + NEY+  L   F  +    ST
Sbjct: 36  LNTIVCIFYVYKIALCNEYIRFLAKCFLYILRCMST 71


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  NVHRT*TYSLVITRL*ILKYTSYGLRDA 132
           N H    Y+L IT+L +  + SY LR A
Sbjct: 76  NCHPLMIYALPITQLPLFAFASYQLRQA 103


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 151 LHCINVEQHENLVPLLS**PAMFWTTTEHSPFWRDSS 261
           LHC +     N++P  +  P++   T+ H P+  D +
Sbjct: 63  LHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGT 99


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 RKLGASVELIASDVLDHYRTFAL 245
           R++  S+  +A+D  + Y TFAL
Sbjct: 309 RQVKTSISFLANDTSNVYETFAL 331


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 121 LRDAHLVKQCLHCINVEQHEN 183
           ++DAHL +Q + C++  Q  N
Sbjct: 291 IKDAHLPQQGISCLSFSQDGN 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,219
Number of Sequences: 5004
Number of extensions: 22403
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)