Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H21
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    24   4.6  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    24   4.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    23   6.1  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    23   8.0  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    23   8.0  

>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 186 TDLLCLILKVDDAKKLLRVISFLREQ*SRYLSC 88
           T++LC +   + A +L R++  + E  ++  SC
Sbjct: 432 TNILCFVKSNEAAARLHRLLELIHESLNQSFSC 464


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 270 THREYADYFSYLKNIFHTNANSNV 199
           TH++     SYL +    NAN N+
Sbjct: 72  THKKKKSVSSYLSSTIQKNANENI 95


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 220 YKCQLKCVHSLDRFTLFNPKS*RCK-KTTKSNLV 122
           Y C + C    D   LFN +  RC   TT+++ +
Sbjct: 64  YSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSI 97


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 258  YADYFSYLKNIFHTNAN 208
            YADY + +K I   NAN
Sbjct: 973  YADYVNEVKRIIQRNAN 989


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 171 NKVNLSRL*THLSWHLYERCFLNKKS 248
           N  N S L   ++W L++ C   KKS
Sbjct: 516 NAANYSAL-NRVTWELFDICIAEKKS 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,310
Number of Sequences: 5004
Number of extensions: 17399
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)