Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H21
         (278 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545...    27   2.8  
08_01_0055 - 375343-375567,375672-377540                               26   3.7  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    26   4.9  
07_03_0613 + 19959206-19959700,19960210-19960657,19960753-199609...    26   4.9  
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    26   4.9  
01_03_0251 + 14247293-14249926                                         26   4.9  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    25   6.5  
07_01_0099 + 741931-743835                                             25   8.6  
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285...    25   8.6  

>03_02_0076 -
           5451137-5452503,5453439-5453866,5453949-5454046,
           5454723-5454836,5455017-5455111,5455222-5455283,
           5455398-5455557,5456247-5456643
          Length = 906

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 183 LSRL*THLSWHLYERCFLNKKSNRRTLDVC 272
           LSR      W L E C+LN +   R ++ C
Sbjct: 362 LSRRTVSFGWRLLEFCYLNNQLVERDVEAC 391


>08_01_0055 - 375343-375567,375672-377540
          Length = 697

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 210 NSNVFTA*TDLLCLILKVDDAKKLLRVISF 121
           N+N +    D  CL  K+D+A KLL V+ F
Sbjct: 521 NTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 550


>09_02_0071 -
           3877231-3877807,3880716-3880722,3880723-3881000,
           3881287-3883916
          Length = 1163

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 249 YFSYLKNIFHTNANSNVFTA*TDLLCLILKVDDAKKLLRVISF 121
           YF+ +K +F  +     ++   DLL    K+DDA +L+  + F
Sbjct: 628 YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670


>07_03_0613 +
           19959206-19959700,19960210-19960657,19960753-19960940,
           19961317-19961637
          Length = 483

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 148 KKTTKSNLVSERTVIPLPLMRELTLD 71
           ++  K N V  +TV  LPL + LTLD
Sbjct: 151 RRHVKVNWVGHKTVKVLPLAKRLTLD 176


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 183 DLLCLILKVDDAKKLLR 133
           D LCL+L+VDD  +LL+
Sbjct: 528 DALCLLLEVDDIDRLLQ 544


>01_03_0251 + 14247293-14249926
          Length = 877

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 249 YFSYLKNIFHTNANSNVFTA*TDLLCLILKVDDAKKLLRVISF 121
           YF+ +K +F  +     ++   DLL    K+DDA +L+  + F
Sbjct: 628 YFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPF 670


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 271 HTSRVRRLLFLFKKHLSYKCQLKCVHSL 188
           H S++  L F  KKH SY+  +K   SL
Sbjct: 584 HESKISVLHFSIKKHDSYEAPIKSKDSL 611


>07_01_0099 + 741931-743835
          Length = 634

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 243 SYLKNIFHTNANSNVFTA*TDLLCLILKVDDAKKLLRVI 127
           SY+KN      N+ V TA  D+ C    ++DA  +   I
Sbjct: 285 SYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSI 323


>01_06_0848 +
           32426550-32426613,32427013-32427167,32428470-32428526,
           32428877-32428930,32429349-32429418,32429951-32432034
          Length = 827

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 183 DLLCLILKVDDAKKLLR 133
           D +CL+L+VDD  +LL+
Sbjct: 530 DAICLLLEVDDIDRLLQ 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,109,732
Number of Sequences: 37544
Number of extensions: 91459
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)