Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H21
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    26   3.5  
AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical...    26   4.6  
Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    25   6.1  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    25   6.1  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    25   6.1  

>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 252 DYFSYLKNIFHTNAN 208
           DYF Y +N+  TNAN
Sbjct: 340 DYFVYTRNVIETNAN 354


>AF016452-12|AAB66011.1|  309|Caenorhabditis elegans Hypothetical
           protein T05H4.5 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 151 CKKTTKSNLVSERTVIPLPLMRELTL 74
           CKK+ K  LV +    PLPL+ +  +
Sbjct: 36  CKKSKKRTLVDDSVKYPLPLIEKFEI 61


>Z81069-1|CAB02990.1|  359|Caenorhabditis elegans Hypothetical
           protein F25H9.1 protein.
          Length = 359

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 104 DYCSLRNEITLSSFFASSTFRIKQSKSV*AVNTFELAFV*KMFF 235
           D+C+L  E TL     S+  R   SKS+  +N+  L ++ +  F
Sbjct: 311 DFCNLNIETTLKVATNSTEARDNSSKSIENLNSCLLIYILQFVF 354


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 232 KHLSYKCQLKCVHSLDR 182
           + LS KCQ  CVH LD+
Sbjct: 243 EELSQKCQKFCVHMLDQ 259


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 232 KHLSYKCQLKCVHSLDR 182
           + LS KCQ  CVH LD+
Sbjct: 243 EELSQKCQKFCVHMLDQ 259


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 232 KHLSYKCQLKCVHSLDR 182
           + LS KCQ  CVH LD+
Sbjct: 243 EELSQKCQKFCVHMLDQ 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,042
Number of Sequences: 27780
Number of extensions: 97910
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)