Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H20
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 198 2e-52
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 198 2e-52
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 198 2e-52
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 123 6e-30
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 0.17
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 1.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 2.1
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 2.8
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 3.7
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 3.7
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 24 4.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 24 6.4
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 24 6.4
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 24 6.4
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 23 8.5
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 198 bits (482), Expect = 2e-52
Identities = 95/103 (92%), Positives = 99/103 (96%)
Frame = +1
Query: 10 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 189
A+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
Sbjct: 22 ASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 81
Query: 190 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 318
DLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD
Sbjct: 82 DLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKD 124
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 198 bits (482), Expect = 2e-52
Identities = 95/103 (92%), Positives = 99/103 (96%)
Frame = +1
Query: 10 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 189
A+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
Sbjct: 22 ASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 81
Query: 190 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 318
DLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD
Sbjct: 82 DLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKD 124
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 198 bits (482), Expect = 2e-52
Identities = 95/103 (92%), Positives = 99/103 (96%)
Frame = +1
Query: 10 ATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 189
A+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
Sbjct: 22 ASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 81
Query: 190 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 318
DLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI PKD
Sbjct: 82 DLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKD 124
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 123 bits (297), Expect = 6e-30
Identities = 67/109 (61%), Positives = 84/109 (77%), Gaps = 10/109 (9%)
Frame = +1
Query: 22 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 183
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 184 --KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 318
TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRD 110
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 0.17
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 52 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 213
+ + HR + +L E + +++ S LLI P Q +RE+A DF +F +
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566
Query: 214 IGALQEASEAYLVGLFE 264
+ A E EAY+ L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 88 ALREIRRYQKSTELLIRKLPFQR 156
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 194 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 286
F S+ PL + + I WVC+ T FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 308 IMVTRLAWMAQRLVSSNRPTR 246
I T W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 34 APSTGGVKKPHRYRPGTVALREIRRY 111
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 201 ETKIGFKVLSNFSNESLERQLADQQLRRF 115
+ + GFK + FSNE L+ +L + + +
Sbjct: 606 QQEFGFKYVQEFSNEDLQGKLIEANEKNY 634
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 34 APSTGGVKKPHRY--RPGTVALREIRRYQKSTELLIRKLP 147
APS+G + + R +LR++RR ++TE++ +LP
Sbjct: 439 APSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.8 bits (49), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 264 FKQTHQIGFTGLLQSANGSRLETKIGF 184
+KQ+ G +G+L S G RL I F
Sbjct: 696 YKQSVDAGLSGMLFSVIGGRLSEGINF 722
>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 163
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 148 FQRLVREIAQDFKTDLRFQS 207
F+ LV+E Q+F DL FQ+
Sbjct: 21 FKMLVQEYLQEFGMDLTFQN 40
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 145 PFQRLVREIAQDFKTDLRFQSAAIGALQEAS 237
P ++ + TD+RFQ+ A LQ+ S
Sbjct: 371 PTTFVINNLIHALATDVRFQTVAFSLLQDLS 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -1
Query: 247 DRLHWPLAKRQWQQTGNEDRF 185
D HW ++ +W TG++ F
Sbjct: 165 DNEHWTISLAEWSPTGHQLSF 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,983
Number of Sequences: 5004
Number of extensions: 24107
Number of successful extensions: 82
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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