Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H20
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 293 LAWMAQRLVSSNRPTR*ASLASCKAPMAADWKRRSVLKS*AISR--TSRWK 147
           L W     V  + P    S A  K P+   W+RR++  S  I    + RW+
Sbjct: 158 LCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 208


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 293 LAWMAQRLVSSNRPTR*ASLASCKAPMAADWKRRSVLKS*AISR--TSRWK 147
           L W     +  + P    S A  K P+   W+RR++  S  I    + RW+
Sbjct: 211 LCWTQDEDIICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 261


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 233 PVKPIWWVC 259
           PVKP  W+C
Sbjct: 231 PVKPCPWIC 239


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 129 QLRRFLIATNFSKRYSTRAITM 64
           QL   L  +  S+ YSTRAI +
Sbjct: 291 QLEYDLQTSIMSRHYSTRAIVI 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,323
Number of Sequences: 438
Number of extensions: 1557
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)