Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H19
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   3.7  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   6.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    23   8.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    23   8.6  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    23   8.6  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   8.6  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 178 TEGDALLAAFEPPRGRTVPQDPRSTG 255
           T+ D  LAA E      VP+D RS G
Sbjct: 110 TKSDTALAARESSEKSEVPRDTRSAG 135


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 141 LRLESLVLLQQALHRGHAVSALPDYHQLLLLTDPGFLLVDLCL 13
           +R +S++ L+Q L     +  LP+   +L    PG LL  L L
Sbjct: 295 VRQDSVLRLRQYLRGNACIDYLPELLSVLKTLLPGILLALLSL 337


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 228 SASAWRFKGGEEGVPLSGEVPDT 160
           + +++ F+ G  G P+ G VP T
Sbjct: 303 ATNSFSFEHGSAGFPIPGSVPST 325


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 208 EPPRGRTVPQDPRSTGETGEADR 276
           +PP G + P+  R     G+ADR
Sbjct: 275 KPPNGISAPKHARCASFDGDADR 297


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 66  HQLLLLTDPGFLLVDLCLVPNY 1
           H  ++L D GF+L  +CL   Y
Sbjct: 43  HLAIVLADKGFMLEQVCLPWRY 64


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 174 EVPDTVGARRQLRLESLVLLQQALHRGHAVSALPDY 67
           EVP  + +      ESL  + Q  H  H  +  PDY
Sbjct: 294 EVPRNLNSSLVDAAESLANVSQQQHHRHPFARQPDY 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,856
Number of Sequences: 5004
Number of extensions: 13135
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)