Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H19
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 35 0.017
06_03_1056 + 27239176-27242361 29 1.1
03_05_0633 + 26276454-26277368 29 1.1
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921... 28 1.9
09_02_0357 + 7788946-7789326,7789620-7789997 27 2.6
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 27 2.6
12_01_0967 + 9739784-9739925,9740096-9740223 27 3.4
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 3.4
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 27 4.5
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 27 4.5
05_01_0329 - 2580083-2580115,2580787-2580864,2580986-2581078,258... 27 4.5
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 27 4.5
04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009... 27 4.5
06_01_0651 + 4711369-4712431,4713069-4713763 26 5.9
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 26 5.9
10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787 26 7.8
06_03_0197 + 17794418-17794771,17795040-17795549 26 7.8
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 26 7.8
03_05_0557 + 25605355-25605798 26 7.8
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 26 7.8
01_01_0923 + 7296781-7296907,7296991-7297619 26 7.8
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 34.7 bits (76), Expect = 0.017
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 171 VPDTVGARRQLRLESLVLLQQALHRGHAVSALPDYHQLLLLTDPGFLLVDLCLVPN 4
+ DT A + LVL + L R +L ++ ++LL DPG +L+D+ VP+
Sbjct: 42 IADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVVLLDIAFVPD 97
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 180 SGEVPDTVGARRQLRLESLVLLQQALHRGHAVSALPDYHQLLLL 49
SGE+P+ +G + LR +LL+Q G SA+ D QLL L
Sbjct: 402 SGEIPEAIGKLKNLR---ELLLEQNELAGPVPSAIGDLTQLLKL 442
>03_05_0633 + 26276454-26277368
Length = 304
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -1
Query: 252 CRARILWDSASAWRFKGGEEGVPLSGEVPDTVGARRQLRLESLVLLQQALHRGHAVSALP 73
CR+ LW+ +A +GG +G GEVP VGAR + A G AV
Sbjct: 130 CRSSGLWEEGTA---EGGAQG---GGEVPIAVGARLVEAADGTPAASDARGGGGAVERAE 183
Query: 72 D 70
D
Sbjct: 184 D 184
>09_04_0285 +
16390786-16391291,16391370-16391957,16392034-16392160,
16392291-16392477,16392585-16392741,16392847-16393201
Length = 639
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 249 RARILWDSASAWRFKGGEEGVPLSGEVPDTVGARRQLRL-ESLVLLQ 112
++R+ W +S ++ G P GEV D V R++L + E V L+
Sbjct: 110 QSRLAWHLSSCFQEDSGRPPFPRCGEVSDMVHCRKRLGVSEDQVFLE 156
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 164 SGTSPLRGTPSSPPLNLH--ADALSHRIRALQ 253
+ TSPLR +P PP LH AD RAL+
Sbjct: 159 ASTSPLRPSPVPPPATLHSAADVQRSVARALE 190
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 192 GVPLSGEVPDTVGARRQLRLESLVLLQQALHRGHAVSALP 73
G LSGE+P +GA R L L L Q A+S LP
Sbjct: 564 GNKLSGEIPSQIGAMRNLSLLHLDNNQLTGRLPPAISHLP 603
>12_01_0967 + 9739784-9739925,9740096-9740223
Length = 89
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 92 MLSPHSPTTTSCCFSLIQASSSST 21
MLSP + T T+ C+ L+++ SSS+
Sbjct: 43 MLSPCAATATTVCWRLLRSDSSSS 66
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 225 ASAWRFKGGEEGVPLSGEVPDTVGARRQLRLESLVLLQQALHRGHAVSALPD 70
A+ + KGG GVP P + L L+ LV+ L G A + +P+
Sbjct: 230 AATFTGKGGHAGVPHDAVDPVVAVSSAVLSLQQLVVSITILKGGDAYNVIPE 281
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 183 LSGEVPDTVGARRQLRLESLVLLQQALHRGHAVSALPDYHQL 58
++GE+P+T+G +Q LESL L L G S++ D + L
Sbjct: 1014 INGEIPETIGQLKQ--LESLDLSHNEL-SGEIPSSMQDLNAL 1052
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 107 PCTAAMLSPHSPTTTSCCFSLIQASSSSTFASCRI 3
PC + + +P SCC L +A+++ T C I
Sbjct: 49 PCGGYLNATAAPPPASCCGPLREAAANETACLCAI 83
>05_01_0329 -
2580083-2580115,2580787-2580864,2580986-2581078,
2581209-2581326,2583350-2583440,2585167-2585207,
2585854-2585981,2586078-2586353,2587318-2587472,
2587557-2587700,2587991-2588567
Length = 577
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 211 PPRGRTVPQDPRSTGETGEADRAGGET*SGSGRQLAVP 324
PP + + G+ GE D GG G G LA+P
Sbjct: 90 PPSASASVAEEQQGGKGGEDDGFGGSAGGGEGGALALP 127
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 26.6 bits (56), Expect = 4.5
Identities = 8/35 (22%), Positives = 16/35 (45%)
Frame = -2
Query: 119 FFSRPCTAAMLSPHSPTTTSCCFSLIQASSSSTFA 15
F ++ C A ++ PH+ CC ++ + A
Sbjct: 76 FHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSA 110
>04_04_0132 +
22998941-22999073,22999218-22999347,23000257-23000950,
23001545-23001580,23003165-23003446
Length = 424
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 16 AKVDEEEAWISEKQQLVVVGECGD 87
AK++E+E WIS+KQ ++++ + D
Sbjct: 388 AKLEEKE-WISQKQMIILLNQATD 410
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 155 PTVSGTSPLRGTPSSPPLNLHADALSHRIRA---LQAKLEKLTGLAARRKAALVDNS 316
P SG SPLR + L LHA L+ R+ L + E L + A AAL + +
Sbjct: 129 PPSSGASPLRRGAAQDCLELHAATLASLSRSASLLASPGEGLPAVRAHLAAALANKA 185
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 187 DALLAAFEPPRGRTVPQDPRSTGETGEADRAGGET 291
+AL +AFE P T+P+ +++ E +A + G T
Sbjct: 813 NALTSAFEGPTKSTIPKSVKASPEAEKAIQEEGST 847
>10_05_0088 - 9037516-9037997,9038171-9038513,9039512-9039787
Length = 366
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = -1
Query: 204 GGEEGVP---LSGEVPDTVGARRQLRLE-SLVLLQQAL 103
GGEE ++ PD ARR++RLE LV QQAL
Sbjct: 65 GGEEAATRPRVATAQPDGAQARREVRLEKELVAEQQAL 102
>06_03_0197 + 17794418-17794771,17795040-17795549
Length = 287
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 101 TAAMLSPHSPTTTSCCFSLIQASSSSTFA 15
+AA SP T CC S I A+ S++ A
Sbjct: 81 SAAFRGQCSPATAYCCCSTIAATKSTSLA 109
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 234 WDSASAWRFKGGEEGVPLSGEVPDT 160
W + W + GE GV + G VP T
Sbjct: 320 WSPPAGWEERVGERGVLVRGWVPQT 344
>03_05_0557 + 25605355-25605798
Length = 147
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 155 PTVSGTSPLRGTPSSPPLNLHADALSH 235
PT SPLR P+ PP + + H
Sbjct: 26 PTTGRRSPLRAAPAPPPPRAYKVTIEH 52
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 170 TSPLRGTPSSPPLNLHADALSHRIRALQAK---LEKLTGLAARRKAALVDNSLY 322
TS L+ S LHA+ + I LQA+ LE+ GL + L D LY
Sbjct: 407 TSLLQRLESGDHDKLHAEKVRDNIEELQARIISLEEAVGLTCLSISKLRDEELY 460
>01_01_0923 + 7296781-7296907,7296991-7297619
Length = 251
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 204 GGEEGVPLSGEVPDTVGARRQLRLESLV 121
GGEE VP+ P VGA R + +E+++
Sbjct: 123 GGEEAVPVHAPAPG-VGAARAVAMEAVL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,637,507
Number of Sequences: 37544
Number of extensions: 137784
Number of successful extensions: 806
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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