Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H19
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 50 3e-07
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 34 0.020
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 34 0.020
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 34 0.020
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 33 0.047
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 33 0.047
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 33 0.047
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 33 0.047
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 33 0.047
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 30 0.44
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 2.3
U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical pr... 26 5.4
U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical pr... 26 5.4
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 26 5.4
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 26 7.2
Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 25 9.5
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKHXXXXXXXXXXXXXXXXXXTEGDALL 198
V+EEEAW++EKQQ++ G++MA VQGLLKKH +GD L+
Sbjct: 1839 VEEEEAWMNEKQQILGSDNFGENMAGVQGLLKKHDTFQVDLELHKQRVADLINKGDTLI 1897
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
+D+EE+WI EK+ LV + G + VQ L +KH
Sbjct: 1730 IDDEESWIKEKKLLVSSDDYGRDLPGVQNLRRKH 1763
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 25 DEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
+E +AW+SEK+ +V + G + + LLKKH
Sbjct: 917 NEADAWMSEKEPIVGSTDYGKDEDSAEALLKKH 949
Score = 31.1 bits (67), Expect = 0.19
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 16 AKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKHXXXXXXXXXXXXXXXXXXTEGDAL 195
A V + E W+ E + L+ + G +A+V+ LLKKH + D+L
Sbjct: 1622 AAVKDLEFWLGEVEILLQSEDYGKDLASVENLLKKHSLLEADIVAHQDRVGEMNEQADSL 1681
Query: 196 L 198
L
Sbjct: 1682 L 1682
Score = 30.7 bits (66), Expect = 0.25
Identities = 10/33 (30%), Positives = 23/33 (69%)
Frame = +1
Query: 25 DEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
++ E W+++++ + + GDS+ +V+ L+KKH
Sbjct: 494 EQAETWMNKQEAFLANTDLGDSLDSVEHLIKKH 526
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
+++E AWI EK+Q+ G + VQ L+KK
Sbjct: 810 IEDELAWIREKEQVAGSTNRGRDLIGVQNLIKK 842
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 19 KVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
K D E+WI+EK+Q V + G +++VQ LL K
Sbjct: 1944 KCDVVESWIAEKEQQVRSEDFGRDLSSVQILLTK 1977
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R VDE WI EK + + G + +VQ L +KH
Sbjct: 1196 RFHRDVDETRDWIQEKDDALDSEDFGRDLRSVQALQRKH 1234
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R DE AWI EK + + G + VQ L +KH
Sbjct: 276 RFNRDADETLAWIGEKDLALSSDDYGRDLNNVQALQRKH 314
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 34 EAWISEKQQLVVVGECGDSMAAVQGLLKKHXXXXXXXXXXXXXXXXXXTEGDALLA 201
E W+S+K+ V GE GD+ AV+ L+K H DAL++
Sbjct: 2635 EQWLSDKETQVARGELGDTTDAVEMLIKGHSAFEETVRKQSEKIDALTKNADALVS 2690
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 25 DEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
+E+ W+S++ L GE GDS+ + L KKH
Sbjct: 2949 EEDLEWLSDRMMLASSGESGDSLQSALSLQKKH 2981
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 1 IIRHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
++R + V+ AWI+EK+ LV + G M + LL++
Sbjct: 2306 LLRFKQLVENVLAWINEKEVLVSTADMGKDMEHCRLLLER 2345
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
VD E WI+EK+ + +CG ++ ++KK
Sbjct: 1569 VDCELQWIAEKKPIASSQDCGRTLTEALNMVKK 1601
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E E+W++EK+ + + G+ A + LL KH
Sbjct: 1677 EVESWMNEKRNALASEDYGNDEDAARKLLSKH 1708
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 215 HADALSHRIRALQAKLEKLTG----LAARRKAALVDNSLY 322
H DA+S I A Q KLE L G ARR+ +VD S Y
Sbjct: 3116 HHDAMS--IAAKQRKLEALFGDLCRECARRRTQIVDASKY 3153
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 34 EAWISEKQQLVVVGECGDSMAAVQGLLKKHXXXXXXXXXXXXXXXXXXTEGDALLA 201
E W+S+K+ V GE GD+ AV+ L+K H DAL++
Sbjct: 2635 EQWLSDKETQVARGELGDTTDAVEMLIKGHSAFEETVRKQSEKIDALTKNADALVS 2690
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 25 DEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
+E+ W+S++ L GE GDS+ + L KKH
Sbjct: 2949 EEDLEWLSDRMMLASSGESGDSLQSALSLQKKH 2981
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 1 IIRHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
++R + V+ AWI+EK+ LV + G M + LL++
Sbjct: 2306 LLRFKQLVENVLAWINEKEVLVSTADMGKDMEHCRLLLER 2345
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
VD E WI+EK+ + +CG ++ ++KK
Sbjct: 1569 VDCELQWIAEKKPIASSQDCGRTLTEALNMVKK 1601
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E E+W++EK+ + + G+ A + LL KH
Sbjct: 1677 EVESWMNEKRNALASEDYGNDEDAARKLLSKH 1708
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 215 HADALSHRIRALQAKLEKLTG----LAARRKAALVDNSLY 322
H DA+S I A Q KLE L G ARR+ +VD S Y
Sbjct: 3116 HHDAMS--IAAKQRKLEALFGDLCRECARRRTQIVDASKY 3153
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 34 EAWISEKQQLVVVGECGDSMAAVQGLLKKHXXXXXXXXXXXXXXXXXXTEGDALLA 201
E W+S+K+ V GE GD+ AV+ L+K H DAL++
Sbjct: 2635 EQWLSDKETQVARGELGDTTDAVEMLIKGHSAFEETVRKQSEKIDALTKNADALVS 2690
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 25 DEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
+E+ W+S++ L GE GDS+ + L KKH
Sbjct: 2949 EEDLEWLSDRMMLASSGESGDSLQSALSLQKKH 2981
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 1 IIRHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
++R + V+ AWI+EK+ LV + G M + LL++
Sbjct: 2306 LLRFKQLVENVLAWINEKEVLVSTADMGKDMEHCRLLLER 2345
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLKK 120
VD E WI+EK+ + +CG ++ ++KK
Sbjct: 1569 VDCELQWIAEKKPIASSQDCGRTLTEALNMVKK 1601
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E E+W++EK+ + + G+ A + LL KH
Sbjct: 1677 EVESWMNEKRNALASEDYGNDEDAARKLLSKH 1708
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 215 HADALSHRIRALQAKLEKLTG----LAARRKAALVDNSLY 322
H DA+S I A Q KLE L G ARR+ +VD S Y
Sbjct: 3116 HHDAMS--IAAKQRKLEALFGDLCRECARRRTQIVDASKY 3153
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R K + E W++E Q+LV G+ +++V+ KKH
Sbjct: 412 RFNRKAEMRETWLTENQRLVSQDNFGNDLSSVEAATKKH 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E EAW+SE++ ++ E G + + +KKH
Sbjct: 1593 EAEAWMSEQELYMMQDERGKDEFSTKNQIKKH 1624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLK 117
VD+E+ WISE+ L G+S+ L K
Sbjct: 1485 VDDEKLWISERLVLAKAQNLGESLPDCHRLQK 1516
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R K + E W++E Q+LV G+ +++V+ KKH
Sbjct: 412 RFNRKAEMRETWLTENQRLVSQDNFGNDLSSVEAATKKH 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E EAW+SE++ ++ E G + + +KKH
Sbjct: 1593 EAEAWMSEQELYMMQDERGKDEFSTKNQIKKH 1624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLK 117
VD+E+ WISE+ L G+S+ L K
Sbjct: 1485 VDDEKLWISERLVLAKAQNLGESLPDCHRLQK 1516
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R K + E W++E Q+LV G+ +++V+ KKH
Sbjct: 412 RFNRKAEMRETWLTENQRLVSQDNFGNDLSSVEAATKKH 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E EAW+SE++ ++ E G + + +KKH
Sbjct: 1593 EAEAWMSEQELYMMQDERGKDEFSTKNQIKKH 1624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLK 117
VD+E+ WISE+ L G+S+ L K
Sbjct: 1485 VDDEKLWISERLVLAKAQNLGESLPDCHRLQK 1516
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R K + E W++E Q+LV G+ +++V+ KKH
Sbjct: 412 RFNRKAEMRETWLTENQRLVSQDNFGNDLSSVEAATKKH 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E EAW+SE++ ++ E G + + +KKH
Sbjct: 1593 EAEAWMSEQELYMMQDERGKDEFSTKNQIKKH 1624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLK 117
VD+E+ WISE+ L G+S+ L K
Sbjct: 1485 VDDEKLWISERLVLAKAQNLGESLPDCHRLQK 1516
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 7 RHEAKVDEEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
R K + E W++E Q+LV G+ +++V+ KKH
Sbjct: 412 RFNRKAEMRETWLTENQRLVSQDNFGNDLSSVEAATKKH 450
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 28 EEEAWISEKQQLVVVGECGDSMAAVQGLLKKH 123
E EAW+SE++ ++ E G + + +KKH
Sbjct: 1593 EAEAWMSEQELYMMQDERGKDEFSTKNQIKKH 1624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 22 VDEEEAWISEKQQLVVVGECGDSMAAVQGLLK 117
VD+E+ WISE+ L G+S+ L K
Sbjct: 1485 VDDEKLWISERLVLAKAQNLGESLPDCHRLQK 1516
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 164 SGTSPLRGTPSSPPLNLHADALSHRIRALQAKLEKLT 274
S TSPL PS PPL +++ I A + K EK T
Sbjct: 209 SATSPLTPPPSPPPLAPSVASVAPEISATEEKEEKTT 245
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 6 SARGKGRRGGSLDQ*EAAAGGSRGVRRQ 89
S RG+GR GG+ + GGS G RRQ
Sbjct: 251 STRGRGRGGGAKKK--PGRGGSTGTRRQ 276
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 6 SARGKGRRGGSLDQ*EAAAGGSRGVRRQ 89
S RG+GR GG+ + GGS G RRQ
Sbjct: 251 STRGRGRGGGAKKK--PGRGGSTGTRRQ 276
>U32305-6|AAV58892.1| 411|Caenorhabditis elegans Hypothetical
protein B0336.7b protein.
Length = 411
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 276 PVSFSSFACRARILWDSASAWRFKGGEEG 190
P + FACR ++D S+WR G+ G
Sbjct: 238 PFNGHHFACRPHNVYDYKSSWRPVPGQNG 266
>U32305-5|AAK18855.2| 501|Caenorhabditis elegans Hypothetical
protein B0336.7a protein.
Length = 501
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 276 PVSFSSFACRARILWDSASAWRFKGGEEG 190
P + FACR ++D S+WR G+ G
Sbjct: 328 PFNGHHFACRPHNVYDYKSSWRPVPGQNG 356
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 279 SPVSFSSFACRARILWDSASAW 214
+PV + ++C +R+LW A +W
Sbjct: 568 TPVQTALYSCFSRVLWGFAMSW 589
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 229 VPQDPRSTGETGEADRAGGET*SGSG 306
+P DP G TG + GG + S SG
Sbjct: 426 IPNDPTLGGPTGSSGSGGGGSNSNSG 451
>Z81051-1|CAB02862.3| 677|Caenorhabditis elegans Hypothetical
protein C55A6.2 protein.
Length = 677
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 4 IRHEAKVDEEEAWISEKQQL 63
I H+AKV E+ W+ E+ +L
Sbjct: 51 IAHDAKVSEKYTWLGERLRL 70
>Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical
protein D2005.6 protein.
Length = 423
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Frame = +1
Query: 211 PPRGRTVPQDPRST----GETGEADRAGG 285
P R RT P PRST G G R GG
Sbjct: 134 PRRSRTAPSRPRSTAPTMGTLGAESRRGG 162
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 229 VPQDPRSTGETGEADRAGGET*SGSG 306
+P DP G TG + GG + S SG
Sbjct: 773 IPNDPTLGGPTGSSGGGGGGSNSNSG 798
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,469,901
Number of Sequences: 27780
Number of extensions: 81994
Number of successful extensions: 396
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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