Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H18
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   136   7e-34
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   136   7e-34
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    26   1.4  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   2.5  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   2.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   3.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   4.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    24   5.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   5.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   7.7  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    23   7.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    23   7.7  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  136 bits (329), Expect = 7e-34
 Identities = 62/99 (62%), Positives = 76/99 (76%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 187
           E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGR
Sbjct: 10  ERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGR 66

Query: 188 ILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           ILTG V    + RTI+IRR+YLH++PKYNR+EKRH+N++
Sbjct: 67  ILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLA 105


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  136 bits (329), Expect = 7e-34
 Identities = 62/99 (62%), Positives = 76/99 (76%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 187
           E+AFQKQ  +F N K G  R   R  K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGR
Sbjct: 10  ERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGR 66

Query: 188 ILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           ILTG V    + RTI+IRR+YLH++PKYNR+EKRH+N++
Sbjct: 67  ILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLA 105


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 17  FQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEG-TYIDKKCPFTGNVSIRGRIL 193
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 194 TGV 202
           TGV
Sbjct: 222 TGV 224


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
          subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 97 TNILRMSHILPFHAPLAIEEH 35
          TN+L+M   LP H    I EH
Sbjct: 16 TNVLKMKKPLPLHMRTKIREH 36


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 47  RKGGMKRKDMRHSKNVGLGFKTPRE 121
           R G     D++ ++N+G+ F+TP +
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQ 218


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 144 SMYVPSTASRGVLKPRPTFLECLISFLFMPPLRLRNTVAC 25
           S++  S+ S  +++   T ++CL +F  +  L   N  AC
Sbjct: 658 SIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFAC 697


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = -2

Query: 253  EIIAPDN-----NCSLQIHFLNNACQDTASDGHVTREWTFLINVCAFNGLTGCLET*TNI 89
            ++I P+N     NC   +  L+   + T S   +T ++   I VC  + ++G      N+
Sbjct: 2502 QVILPENLVNLFNCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRISG------NL 2555

Query: 88   LRMSHILPFHAPLAI 44
            L + H + F +  A+
Sbjct: 2556 LTLLHGISFDSTKAV 2570


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 191 LTGVVQKMNLQRTIVIRRDYLHYLPK 268
           +TG++   NL  T+   RD+ H L K
Sbjct: 441 ITGLLSADNLSETVSQARDFSHTLSK 466


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 214 HFLNNACQDTAS 179
           HF NNACQ  AS
Sbjct: 15  HFHNNACQSNAS 26


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 185 RILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRH 292
           RIL G V  +N     V+   +    P YN+ +K H
Sbjct: 809 RILRGEVNLLNYSLENVVLNIFKKQTPYYNQADKVH 844


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 86  KNVGLGFKTPREAVEGTYIDK 148
           +N GLG K   E   G YID+
Sbjct: 116 ENSGLGSKYSTEIANGVYIDE 136


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 304 RHVPVSLLKSVVFRQVMEIIAPDNNCSLQIHFLNNACQDTASDGHVTR 161
           RH+  S  +  V  + +  I  D N +L+ +  NN+    A+ G +T+
Sbjct: 395 RHLATSAKEDFVKVEKLNKIIKDENENLKEYIRNNSLSFQATAGELTQ 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,859
Number of Sequences: 5004
Number of extensions: 26948
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)