Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H18
(305 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 120 2e-28
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 118 9e-28
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 118 9e-28
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 118 9e-28
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 116 4e-27
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 116 4e-27
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 30 0.41
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 29 0.72
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 0.72
08_02_0383 - 16539472-16539633,16543044-16543205 28 1.7
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 28 1.7
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 26 5.1
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 26 5.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 26 6.7
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178 25 8.9
01_06_1475 + 37634831-37636297 25 8.9
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 120 bits (290), Expect = 2e-28
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)
Frame = +2
Query: 23 KQATVFLNRKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRI 190
+Q F +K G +K R KN+GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 191 LTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNM 301
+ G + RTI++RR+YLH++ KY R+EKRH N+
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNI 99
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 118 bits (284), Expect = 9e-28
Identities = 61/112 (54%), Positives = 76/112 (67%), Gaps = 14/112 (12%)
Frame = +2
Query: 8 EKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
EKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCPFTG V
Sbjct: 6 EKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTV 65
Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYN---------RFEKRHRNM 301
SIRGRI+ G + RTI++RR+YLH++ KY R+EKRH N+
Sbjct: 66 SIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNI 117
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 118 bits (284), Expect = 9e-28
Identities = 61/112 (54%), Positives = 76/112 (67%), Gaps = 14/112 (12%)
Frame = +2
Query: 8 EKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
EKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCPFTG V
Sbjct: 6 EKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTV 65
Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYN---------RFEKRHRNM 301
SIRGRI+ G + RTI++RR+YLH++ KY R+EKRH N+
Sbjct: 66 SIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNI 117
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 118 bits (284), Expect = 9e-28
Identities = 61/110 (55%), Positives = 73/110 (66%), Gaps = 12/110 (10%)
Frame = +2
Query: 8 EKAFQKQATVFLNRKGGMKRKDM-----RHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
E+AF KQ VFL K K K R KN+GLGFKTPREA+EGTYIDKKCPFTG V
Sbjct: 6 ERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTV 65
Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNR-------FEKRHRNM 301
SIRGRI+ G + RTI++RR+YLH++ KY R +EKRH N+
Sbjct: 66 SIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNI 115
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 116 bits (279), Expect = 4e-27
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Frame = +2
Query: 8 EKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
EKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCPFTG V
Sbjct: 6 EKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTV 65
Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNR 277
SIRGRI+ G + RTI++RR+YLH++ KY R
Sbjct: 66 SIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 116 bits (279), Expect = 4e-27
Identities = 56/95 (58%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Frame = +2
Query: 8 EKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
EKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCPFTG V
Sbjct: 6 EKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTV 65
Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNR 277
SIRGRI+ G + RTI++RR+YLH++ KY R
Sbjct: 66 SIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 29.9 bits (64), Expect = 0.41
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 224 AANSFSEQRLSGYGLGWTRYP*MDISYQCMCLQR 123
A+ ++ R S YG G+ R D+ Y+C+ L R
Sbjct: 986 ASRAYRRSRTSTYGTGFARISSWDLRYRCLFLSR 1019
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 44 NRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 187
N G ++RH+ ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 125 VEGTYIDKKCPFTGNVSIRGRILTGVVQKM-NLQRTIVIRRDYLHYLPKY 271
V GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 191 LTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKR 289
+ G+V +Q+++V+ D L + YNR+ KR
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKR 36
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 196 CQDTASDGHVTREWTFLINVCAFNGLTGCLET*TNILRMSHILPFHAPLAIE 41
C + + HV W+ + CAF GL E R I+PFHAP + +
Sbjct: 357 CLNYLTSPHVVI-WSAVTASCAFPGLFEAQELMAKN-RFGEIVPFHAPFSTD 406
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = -2
Query: 265 RQVMEIIAPDNNCSLQIHFLNNACQDTAS------DGHVTREWTFLINVCAFNGLTGC 110
R+++++++P N QI +L+ + S D +T + L N+ FNG GC
Sbjct: 164 RELIQLLSPLNPIPSQIRYLHYISRRNVSAVWPPGDRALTLDCVILRNIPGFNGEGGC 221
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 159 NGHFLSMYVPSTASRGVLK--PRPTFL-ECLISFLFMPPLRLRNTVAC 25
NGH S+YVP T SR K PR + L + ++ F P L+ VAC
Sbjct: 1066 NGHHPSLYVP-THSRYYKKKLPRGSMLSDMILCFEVKPSAILQWRVAC 1112
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 187 YPDRRCSENEFAANNCYQARLSPLPA*IQQI*EATQE 297
Y DRR ++E A Y+A+LS + Q + E T +
Sbjct: 205 YLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSD 241
>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
Length = 1143
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 298 VPVSLLKSVVFRQVMEIIAPDNNCSLQI-HFLNNACQDTASDGHVTREWTFLINVCAFNG 122
+P+ +L S+ ++ +P ++C+ Q + L N + DG ++ W ++ C + G
Sbjct: 15 LPIPVL-SLALVLLLNFTSPTSSCTEQEKNSLLNFLTGLSKDGGLSMSWKDGVDCCEWEG 73
Query: 121 LT 116
+T
Sbjct: 74 IT 75
>01_06_1475 + 37634831-37636297
Length = 488
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 19 SETGDGVPQSQGGHEKEG 72
S+ D VP QGGHE+ G
Sbjct: 50 SDMADLVPSGQGGHEQGG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,856
Number of Sequences: 37544
Number of extensions: 190471
Number of successful extensions: 474
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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