Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H18
         (305 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   160   6e-40
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       160   6e-40
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       160   6e-40
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   160   6e-40
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...    67   8e-12
BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sortin...    27   8.1  
BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sortin...    27   8.1  
BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sortin...    27   8.1  

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  160 bits (389), Expect = 6e-40
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 5/104 (4%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNV 172
           E+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKCPFTGNV
Sbjct: 7   ERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNV 66

Query: 173 SIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           SIRGRIL+GVV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 67  SIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 110


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 200 VVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNMS 304
           VV KM +QRTIVIRRDYLHY+ KYNRFEKRH+NMS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMS 35


>BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 5   EEKAFQKQATVFLNRKGGMKRKDMRH 82
           EE+ + KQ  V L RKG + RK M H
Sbjct: 280 EERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 5   EEKAFQKQATVFLNRKGGMKRKDMRH 82
           EE+ + KQ  V L RKG + RK M H
Sbjct: 280 EERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 5   EEKAFQKQATVFLNRKGGMKRKDMRH 82
           EE+ + KQ  V L RKG + RK M H
Sbjct: 280 EERRYFKQQEVVLWRKGDIVRKSMSH 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,449,561
Number of Sequences: 237096
Number of extensions: 1061765
Number of successful extensions: 2069
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)