Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H18
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   135   5e-33
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    27   2.0  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    26   4.5  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    26   4.5  
U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    26   4.5  
AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear recep...    26   4.5  
Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical pr...    25   7.9  
X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha nicot...    25   7.9  
X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic acety...    25   7.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  135 bits (327), Expect = 5e-33
 Identities = 64/101 (63%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
 Frame = +2

Query: 8   EKAFQKQATVFLNRKGGM---KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSI 178
           E+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+AVEGTYIDKKCP+ GNV I
Sbjct: 6   ERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPI 65

Query: 179 RGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHRNM 301
           RG ILTGVV K  + RTIV+RRDYLHY+ KY R+EKRH+N+
Sbjct: 66  RGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNV 106


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 246 SRLITIVRCKFIF*TTPVRIRPRMDTLPVNGHFLSMYVPSTASRGVLK 103
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -2

Query: 268 FRQVMEIIAPDNNCSLQIHFLNNACQDTASDGHVTREWTFLINVCAFNGLTGCLE 104
           +R +M+    D    L I F      D    G VTREW FL++   FN   G  E
Sbjct: 405 YRHIMDKKDYDLRNKLWIEFFGETGLDY---GGVTREWFFLLSHQIFNPYYGLFE 456


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 238 DNNCSLQIHFLNNACQDTASD 176
           DN C L    +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 219 CSEQLLSGAIISITCLNTTDL 281
           C EQ +SG +++  C NT DL
Sbjct: 50  CFEQNVSGQLLTFCCCNTDDL 70


>Z81571-6|CAB04616.1|  460|Caenorhabditis elegans Hypothetical
           protein M01G12.7 protein.
          Length = 460

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 200 VVQKMNLQRTIVIRRDYLHYLPKYNRFEKRHR 295
           V QK N+Q  +V+R   ++YL K ++  K+HR
Sbjct: 107 VQQKENIQ-ILVVRVGGVYYLAKLSKENKKHR 137


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 110 TPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKR 289
           T  + +  T+ + +CPFT N  +R         +  L+   V+  DY    P++N F   
Sbjct: 149 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 205

Query: 290 HRNM 301
            +NM
Sbjct: 206 EKNM 209


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 110 TPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKR 289
           T  + +  T+ + +CPFT N  +R         +  L+   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 290 HRNM 301
            +NM
Sbjct: 271 EKNM 274


>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 RVHPRPYPDRRCSENEFAANNCYQARLS 252
           R H RPY   RC +  FA  N  Q+ LS
Sbjct: 181 RTHTRPYACHRC-DASFARKNDLQSHLS 207


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 110 TPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKR 289
           T  + +  T+ + +CPFT N  +R         +  L+   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 290 HRNM 301
            +NM
Sbjct: 271 EKNM 274


>AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 110 TPREAVEGTYIDKKCPFTGNVSIRGRILTGVVQKMNLQRTIVIRRDYLHYLPKYNRFEKR 289
           T  + +  T+ + +CPFT N  +R         +  L+   V+  DY    P++N F   
Sbjct: 166 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 222

Query: 290 HRNM 301
            +NM
Sbjct: 223 EKNM 226


>Z81093-1|CAB03148.2|  507|Caenorhabditis elegans Hypothetical
           protein F09E8.7 protein.
          Length = 507

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 176 WTRYP*MDISYQCMCLQRPH 117
           W R   +DI    MC+QRPH
Sbjct: 338 WVRKVFLDILPLLMCMQRPH 357


>X98601-1|CAA67198.1|  507|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit protein.
          Length = 507

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 176 WTRYP*MDISYQCMCLQRPH 117
           W R   +DI    MC+QRPH
Sbjct: 338 WVRKVFLDILPLLMCMQRPH 357


>X98246-1|CAA66902.1|  507|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 507

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 176 WTRYP*MDISYQCMCLQRPH 117
           W R   +DI    MC+QRPH
Sbjct: 338 WVRKVFLDILPLLMCMQRPH 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,707,447
Number of Sequences: 27780
Number of extensions: 164211
Number of successful extensions: 373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)