Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H17
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical...    25   7.3  

>Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical
           protein T21B4.12 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 174 SPRTSGPGCSFFFLMILMVDLFLPKCSY 91
           +P   G G SFF   IL+V  F   C Y
Sbjct: 134 NPTNVGIGFSFFVAFILLVSFFPEGCHY 161


>Z73976-1|CAA98289.1|  324|Caenorhabditis elegans Hypothetical
           protein T07C12.1 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 122 WSIYFYLSVLIKCYQNVFNKIFLYVKKKKKNSRLG 18
           W++Y Y+  +   +  + N IFLY+   +K++R G
Sbjct: 5   WALY-YIPKVFASFSYLVNPIFLYLIFTEKSNRYG 38


>Z83218-5|CAB05691.1|  352|Caenorhabditis elegans Hypothetical
           protein C31A11.9 protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 98  VLIKCYQNVFNKIFLYVKKKKKNSRLGLSLSR 3
           +++  Y+NV    F+   KK +NS+ G  L R
Sbjct: 306 IIVSQYRNVIKNYFISRFKKFRNSKCGKFLKR 337


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
          protein K11E4.1 protein.
          Length = 299

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 95 LIKCYQNVFNKIFLYVKKKKKNS 27
          L KCY+ VF  I+    KKK NS
Sbjct: 3  LSKCYEKVFIHIYWSSIKKKLNS 25


>AF039052-10|AAF98634.1|  536|Caenorhabditis elegans Hypothetical
           protein T22D1.1 protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 110 FYLSVLIKCYQNVFNKIFLYVKKKKK 33
           FYL ++ KCY + F   F++  K++K
Sbjct: 431 FYLPIVFKCYYDSFYG-FIFDNKRRK 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,887,771
Number of Sequences: 27780
Number of extensions: 31061
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)