Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H17
         (221 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   3.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   3.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   7.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    19   9.5  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -3

Query: 150 CSFFFLMILMV 118
           C+FFFL ++++
Sbjct: 7   CTFFFLSVILI 17


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 171 PRTSGPGCSFFFLMILM 121
           P +S   C FFF++IL+
Sbjct: 371 PGSSIWSCLFFFMLILI 387


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 171 PRTSGPGCSFFFLMILM 121
           P +S   C FFF++IL+
Sbjct: 424 PGSSIWSCLFFFMLILI 440


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 158 PEVRGLKA 181
           PEVRGLK+
Sbjct: 344 PEVRGLKS 351


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 158 PEVRGLKA 181
           PEVRGLK+
Sbjct: 344 PEVRGLKS 351


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 83  YQNVFNKIFLYVKKK 39
           YQ +FN  FL  + K
Sbjct: 119 YQEIFNGYFLNSESK 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,646
Number of Sequences: 438
Number of extensions: 540
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)