Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H16
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.36 
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    27   0.82 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   2.5  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   5.8  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   5.8  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    24   7.7  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 266 NSKSYHEKNIA*ARTRRGF-YSKYASIENVDHVDICAVRLEVPLVRTRKTSVVD 108
           N  S ++ ++   RT   F Y ++ +++N + V +  V        TRK+ VVD
Sbjct: 227 NKSSDYDPDLCAPRTEGSFIYEEFMNVDNAEDVKVYTVGPHYSHAETRKSPVVD 280


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 161 AVRLEVPLVRTRKTSVVDFAKSGGSIW 81
           A R+  PL++TR   V+DFA +  ++W
Sbjct: 42  APRMTAPLMQTRGMRVMDFAGTKENVW 68


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 126 KN*RRRLCKERREHLVREVIRRPWLLHVVVANYKS 22
           +N  R LC  ++ +  +++ R P L HV   N KS
Sbjct: 796 QNSHRYLCSLKKNNSQKDIHRNPLLSHVFDTNTKS 830


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 200 YASIENVDHVDICAVRLEVPLVRTRKTSVV 111
           +A  ENVD  D+C   L+   +    T VV
Sbjct: 95  FADFENVDGADLCVQELDGKQILKNHTFVV 124


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 401 AMLLGSSPSPCRILSQPIS*VVNGAQTYCHNINNRCRSLSC 279
           A+ +GS+P P R L Q    +V GA    H    R  S+SC
Sbjct: 22  AVYIGSTPDPPRRLRQHNGEIVGGASKTKH---GRPWSISC 59


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +1

Query: 19  PGLVVGNDDVQQPRPPNYFPDQMLPPLFAKSTTLV------FLVRTRGTSKRTAHMST*S 180
           P  +  +     P PP   PD +   L  K  T V       ++  +   K +AH    S
Sbjct: 318 PDTISRHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLAS 377

Query: 181 TFSIL 195
            F+IL
Sbjct: 378 IFAIL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,929
Number of Sequences: 5004
Number of extensions: 30254
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)