Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H16
         (402 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1030 - 30249160-30250403,30250787-30251666                       31   0.26 
04_04_0881 + 29055724-29059197                                         29   1.8  
06_03_1264 - 28834220-28834816,28834918-28835307                       27   4.2  
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954...    26   9.7  

>04_04_1030 - 30249160-30250403,30250787-30251666
          Length = 707

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 113 VDFAKSGGSIWSGK*FGGLGCCTSSLP 33
           V F  S GSI SG+   G+GCC SS+P
Sbjct: 155 VSFCASNGSIISGE-CSGVGCCQSSVP 180


>04_04_0881 + 29055724-29059197
          Length = 1157

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 291 ATAVIYIMTICLCAIHYLRNWLRKYTTRRRG 383
           A  V+ ++  C C ++ L  W R++  +R G
Sbjct: 773 AATVLLLVLFCCCCVYSLLRWRRRFIEKRDG 803


>06_03_1264 - 28834220-28834816,28834918-28835307
          Length = 328

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 102 KERREHLVREVIRRPWLLHVVVANYKSRL--RAPSC 1
           +  R  +V  +++ PWL+   V NY + L  RA +C
Sbjct: 167 RNARFKIVNRIVKGPWLVRATVGNYAACLLGRALTC 202


>02_02_0375 +
           9543411-9543872,9547222-9547290,9547382-9547384,
           9548336-9548422,9549027-9549094,9549192-9549333
          Length = 276

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 180 NVLNTSIFRIKPPSRPGSSNIFLMI 254
           N+L  SIFR  PP R GS+    +I
Sbjct: 237 NILGRSIFRYWPPGRIGSTTTDCLI 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,015
Number of Sequences: 37544
Number of extensions: 209806
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)