Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H16
         (402 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280362-1|AAP35084.1| 2386|Homo sapiens EGF domain-containing p...    31   1.9  
AB011541-1|BAA32469.2| 2785|Homo sapiens MEGF8 protein.                31   1.9  
BC093695-1|AAH93695.1|  127|Homo sapiens CACNA1C protein protein.      29   5.8  
AY129012-1|AAM98755.1|  127|Homo sapiens unknown protein.              29   5.8  

>AY280362-1|AAP35084.1| 2386|Homo sapiens EGF domain-containing
            protein protein.
          Length = 2386

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 380  PSPCRILSQPIS*VVNGAQTYCH 312
            P PCR+LS P +   +GA T+CH
Sbjct: 1415 PDPCRLLSSPEACNQSGACTWCH 1437


>AB011541-1|BAA32469.2| 2785|Homo sapiens MEGF8 protein.
          Length = 2785

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 380  PSPCRILSQPIS*VVNGAQTYCH 312
            P PCR+LS P +   +GA T+CH
Sbjct: 1814 PDPCRLLSSPEACNQSGACTWCH 1836


>BC093695-1|AAH93695.1|  127|Homo sapiens CACNA1C protein protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 122 TSVVDFAKSGGSIWSGK--*FGGLGCCTS--SLPTTSPGCEHP 6
           TSVV+   S GSIW G+       GCC+S  SLP    GC  P
Sbjct: 10  TSVVEPLTSQGSIWEGEKSTHSIWGCCSSHISLPGGMWGCLPP 52


>AY129012-1|AAM98755.1|  127|Homo sapiens unknown protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 122 TSVVDFAKSGGSIWSGK--*FGGLGCCTS--SLPTTSPGCEHP 6
           TSVV+   S GSIW G+       GCC+S  SLP    GC  P
Sbjct: 10  TSVVEPLTSQGSIWEGEKSTHSIWGCCSSHISLPGGMWGCLPP 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,725,943
Number of Sequences: 237096
Number of extensions: 1125603
Number of successful extensions: 2297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2297
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)