Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H16
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    32   0.13 
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    26   8.8  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    26   8.8  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    26   8.8  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    26   8.8  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    26   8.8  
AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -2

Query: 203 KYASIENVDHVDICAVRLEVPLVRTRKTSVVDFAKSGGSI 84
           KY+++E +  VDI   R   PL+ T KTS+ + AKS  SI
Sbjct: 139 KYSNLEKLTDVDIMYAR---PLIYTLKTSIENLAKSYSSI 175


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 365 ILSQPIS*VVNGAQTYCHNINNRCRSLSCALRTNSK 258
           ++++ +S ++ GAQ Y   +N  C    C  +TNS+
Sbjct: 772 VVARSVSILIGGAQFYKKKVNEFCYCEKCGKQTNSR 807


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 192 TSIFRIKPPSRPGS 233
           TS  RI+PPSRPGS
Sbjct: 405 TSSSRIRPPSRPGS 418


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 211 FILNMLVLRTLITSTYAQFV 152
           FI+N+LV+  +  STY QFV
Sbjct: 204 FIVNVLVVPAVFCSTYLQFV 223


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 140 EALLNELRICRRDQRSQY*HI*N--KTPVASWLK 235
           E   NEL    R+ RS+Y H+ N  +T + SW K
Sbjct: 271 EYFKNELSSAIREIRSEYDHVSNTTRTDIESWYK 304


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 140 EALLNELRICRRDQRSQY*HI*N--KTPVASWLK 235
           E   NEL    R+ RS+Y H+ N  +T + SW K
Sbjct: 254 EYFKNELSSAIREIRSEYDHVSNTTRTDIESWYK 287


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 211 FILNMLVLRTLITSTYAQFV 152
           FI+N+LV+  +  STY QFV
Sbjct: 204 FIVNVLVVPAVFCSTYLQFV 223


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 211 FILNMLVLRTLITSTYAQFV 152
           FI+N+LV+  +  STY QFV
Sbjct: 204 FIVNVLVVPAVFCSTYLQFV 223


>AF003140-1|ABR92609.1|  538|Caenorhabditis elegans Hypothetical
           protein C44E4.5 protein.
          Length = 538

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = -2

Query: 272 RTNSKSYHEKNIA*ARTRRGFYSKYASIENVDHVDICAVRLEVPLVRTRKTSVVDFAKSG 93
           + N  +YH ++    +TR   +S   +++++D+ D   V   + L++        F  +G
Sbjct: 171 KLNILAYHVESDDSKKTRSRIHSIRINLDDIDYADSLTVEKSMDLIQNGHFETCTFTNNG 230

Query: 92  GSIW 81
             I+
Sbjct: 231 EIIF 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,044
Number of Sequences: 27780
Number of extensions: 180377
Number of successful extensions: 473
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)