Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H15
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 171 2e-43
07_01_0071 - 522920-523063,524125-524212,524289-524677 169 7e-43
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 93 1e-19
11_04_0056 + 12942802-12942920,12943022-12943115 45 3e-05
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 41 3e-04
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 1.8
02_05_0442 - 29044736-29046604 29 1.8
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 28 2.4
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 2.4
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 28 3.1
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 4.1
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 7.2
06_01_0779 - 5823389-5823787 27 7.2
01_07_0193 - 41892361-41894010 27 7.2
01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915... 27 7.2
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 26 9.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 26 9.6
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 26 9.6
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 171 bits (415), Expect = 2e-43
Identities = 74/129 (57%), Positives = 99/129 (76%)
Frame = +3
Query: 9 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 188
V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K++
Sbjct: 2 VSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLR 61
Query: 189 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNRR 368
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D +
Sbjct: 62 FLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTK 121
Query: 369 RVVVPAALR 395
R+V+P AL+
Sbjct: 122 RMVIPDALK 130
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 169 bits (411), Expect = 7e-43
Identities = 73/129 (56%), Positives = 97/129 (75%)
Frame = +3
Query: 9 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 188
V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K++
Sbjct: 2 VSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLR 61
Query: 189 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNRR 368
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D +
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTK 121
Query: 369 RVVVPAALR 395
R+VVP AL+
Sbjct: 122 RMVVPDALK 130
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 92.7 bits (220), Expect = 1e-19
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +3
Query: 207 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNRRRVVVPA 386
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D +R+V+P
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 387 ALR 395
AL+
Sbjct: 62 ALK 64
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +3
Query: 300 RGKNALRRLRTYDGCPPPFDNRRRVVVPAALR 395
RG+ AL RL+ Y+G PPP+D +R+V+P AL+
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALK 40
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 41.1 bits (92), Expect = 3e-04
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Frame = +3
Query: 42 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 185
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 186 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNR 365
R R P +I+ VRGM+P K G+ L+ Y G P + +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHEAQ 659
Query: 366 RRVVVP 383
+ V +P
Sbjct: 660 KPVPLP 665
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 124 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 303
+ V+NR T + G N L S++ ++ S + VDL + LH + + ++ L V
Sbjct: 35 ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94
Query: 304 GRMH 315
+H
Sbjct: 95 NMLH 98
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 151 EMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITMALLLKPVIF 11
E L+ +TT T+ ++ A + SRP + P P+ + P+ F
Sbjct: 61 EQLVAKTKTTRTVIATTNGRAAPSQSRPRRRPAPAAAASAASLPMTF 107
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 185 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK 24
H++ V E+ +V F DH+ + L N+C + + VD G +TK
Sbjct: 69 HEIAGVVTEVGADVKGFKVGDHDCENCNSSLENHCSKCVVTYNS-VDSDGTVTK 121
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 207 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 353
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 109 PSSRTLAITAASRPSKCPRPSITMALLLKPVIF 11
P RT + A + PS CP + ALLL P F
Sbjct: 141 PPIRTPVLPAHALPSSCPLEPLEFALLLLPSPF 173
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 181 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITM 38
NF++ L + +IC+Q T FP+ +L I S+ S P P TM
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTM 260
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 346 GQPSYVRSLLNAFFPRSVLCGII 278
G + VRS+L+ FPRSVL G +
Sbjct: 673 GWDNKVRSILSTSFPRSVLLGAL 695
>06_01_0779 - 5823389-5823787
Length = 132
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 94 RSCWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVM--STQPVDL 231
R CW T W R+ A +S T +LCHS ++ S P D+
Sbjct: 78 RCCW--TSWWIVTAPRMMLSAPTSYTWLNLCHSMASTILVRSNPPRDV 123
>01_07_0193 - 41892361-41894010
Length = 549
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 185 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP--VDYYGLIT 27
H+ Q P I GN+ F N H F+ + L ST QV P + Y G+ T
Sbjct: 37 HRPQANP--ILGNLVAFLANGHRFLDWSTGLLAAAPASTMQVHGPLGLGYCGVAT 89
>01_03_0276 -
14489847-14489921,14490144-14490240,14491480-14491546,
14491748-14491877,14491995-14492152,14493004-14493235,
14493760-14493895,14493982-14494085,14495709-14495987
Length = 425
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 270 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNRRRVVVPAA 389
V ++PH R + LR + PPP + V VP A
Sbjct: 39 VSPLLPHCGRRRRCVLRSKASSSPSPPPSPGKEAVAVPTA 78
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 185 HKLQ-FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAPVD 45
+KL+ F P EI + + H F++ +QD++N + +VPAP D
Sbjct: 372 YKLERFDPPEIPSDFD----GRHKFLTPRQDVNNLSDLAPPEVPAPED 415
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 78 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 188
A A ++ + VVVV CE+ I+G N +K +S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 54 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQ 140
+GHLL R + + LEG KV + CEQ
Sbjct: 86 KGHLLDRHGLYMCDLCLEGRKVFI--CEQ 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,208,077
Number of Sequences: 37544
Number of extensions: 265170
Number of successful extensions: 740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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