Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H14
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   109   9e-26
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   108   2e-25
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.0  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   3.4  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   4.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   4.5  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   4.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    24   6.0  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  109 bits (263), Expect = 9e-26
 Identities = 48/91 (52%), Positives = 62/91 (68%)
 Frame = +1

Query: 64  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 243
           M  V+VKDV+  K +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 244 LRHIYIRSPVGVKTVTRIFGGRKRNGVTPSH 336
            RHIY+R  VGV  + +++GG    G+ PSH
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSH 91


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  108 bits (260), Expect = 2e-25
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = +1

Query: 64  MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 243
           M  V+VKDV+  + +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 244 LRHIYIRSPVGVKTVTRIFGGRKRNGVTPSH 336
            RHIY+R  VGV  + +++GG    G+ PSH
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSH 91


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 286 QS*LQQESGYRCDAV*QHSVHKTNQGHR 203
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 67  RSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 162
           +S T+K         T A+  KKI  + +PDH
Sbjct: 121 QSFTIKSSTTYHTTPTTASENKKIESITIPDH 152


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 151 PSLCRSFSSERLQF*RFCLVQHPSL 77
           PSL  SFS E   F   CL ++PSL
Sbjct: 542 PSLPDSFSPEARDFVNKCLNKNPSL 566


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 124 HLKKIGKVKVPDHMDLVKTAR--FKELAPYDPDWFYVRCAAILRHIYI 261
           H K   K   P H D  KT+R   KE  P  P   Y R  +  R  YI
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSRNTSKEGLPSSPTMLY-RTTSNTRGDYI 673


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -2

Query: 231 AYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDDFVLFNILHCNGTHH 61
           AY  P  ++ S +    CL      + +  + L + S +    +  F+I H  G HH
Sbjct: 48  AYTTPSTLLAS-YEHFGCLDDFLRYYYIAVSVLIEASDFEALAYEYFSIAHSQGVHH 103


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 158 IIWTW*RQLVSRNWL 202
           I W+W  QL++R W+
Sbjct: 177 ISWSWLLQLIARTWM 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,764
Number of Sequences: 5004
Number of extensions: 25877
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)