Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H14
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 120 4e-28
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 27 4.1
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538... 27 5.5
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 26 7.2
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 26 7.2
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 26 9.6
07_03_0005 - 12265405-12265599,12266073-12266190,12266867-122669... 26 9.6
04_03_0980 + 21406822-21409496,21410322-21410376 26 9.6
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 120 bits (288), Expect = 4e-28
Identities = 52/92 (56%), Positives = 69/92 (75%)
Frame = +1
Query: 76 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 255
TVKDV + VK +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 256 YIRSPVGVKTVTRIFGGRKRNGVTPSHFWRSS 351
Y+R +GV +I+GGR+RNG P HF +SS
Sbjct: 68 YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSS 99
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 177 LYQVHMIW--NLHFADLFQVSGYSFDDFV 97
L +H +W ++ FAD+ +S +FD+FV
Sbjct: 362 LASLHQVWKFSITFADVLGLSSVTFDEFV 390
>02_02_0431 -
10152228-10152352,10152688-10152919,10153602-10153808,
10153915-10154034,10154114-10154260,10155080-10155147,
10155502-10155667,10156765-10156914,10157219-10157335,
10158177-10158281,10159050-10159147,10159594-10159763,
10161489-10161511,10161927-10162006,10162191-10162259,
10163198-10163442,10163614-10163810
Length = 772
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 303 TKNSSDSLNSNRRADIDVTQYSSTAYIKPIRVIGSQFLETSCLYQVHMI 157
T S++ +N+ +DV ++KP + G +LET + +HM+
Sbjct: 444 TTVSNEIVNNVVGTQVDVESLFPIPFLKPPGLSGQNWLETIVVSTLHMV 492
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 48 LESIHDAFRYSEG-C*TRQNRQNCSRSLEKDRQSEGSRS 161
L S D R S+G C R+ SRS E+D SE RS
Sbjct: 260 LPSARDRERSSDGECARSSPRRRRSRSHERDHDSERDRS 298
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 126 LEKDRQSEGSRSYGLGKDSSFQGT 197
LE+ +G RSY LGK SF+ T
Sbjct: 475 LERINSKKGMRSYQLGKQLSFRWT 498
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 117 YSFDDFVLFNILHCNGTHHVYFLNQLR 37
Y FD ++LHC T H+ LN +R
Sbjct: 96 YLFDSTKDISVLHCGHTIHLECLNVMR 122
>07_03_0005 -
12265405-12265599,12266073-12266190,12266867-12266952,
12268056-12268156,12268212-12268323
Length = 203
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 208 HRE-PVP*NELSLPSPYDLEPSLCRSFS-SERLQF*RFCLVQHPS 80
HR+ PVP + +L D + R + S R+ F R C V HPS
Sbjct: 44 HRDLPVPVTKTTLSQAVDAFAAAGRGANTSSRILFSRVCRVGHPS 88
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 25.8 bits (54), Expect = 9.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 114 SFDDFVLFNILHCNGTHHVYFLN 46
SF D +++HC+ H+++ L+
Sbjct: 757 SFPDLKTLHVIHCSNLHNIFVLD 779
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,837,760
Number of Sequences: 37544
Number of extensions: 162184
Number of successful extensions: 423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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