Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H14
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 112 8e-26
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 112 8e-26
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 1.2
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 28 1.6
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 28 1.6
Z82051-3|CAB04817.1| 337|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical p... 26 6.6
Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical p... 26 6.6
AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical... 26 6.6
U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 112 bits (269), Expect = 8e-26
Identities = 50/97 (51%), Positives = 67/97 (69%)
Frame = +1
Query: 61 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 240
M R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A+
Sbjct: 1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60
Query: 241 ILRHIYIRSPVGVKTVTRIFGGRKRNGVTPSHFWRSS 351
+ RH+Y R P G+ +++GG KR GV P+HF S+
Sbjct: 61 LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSA 96
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 112 bits (269), Expect = 8e-26
Identities = 50/97 (51%), Positives = 67/97 (69%)
Frame = +1
Query: 61 MMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAA 240
M R+ ++KDV+Q + K++A LKK GKVKVP+ DLVK KELAP DPDWFY R A+
Sbjct: 1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60
Query: 241 ILRHIYIRSPVGVKTVTRIFGGRKRNGVTPSHFWRSS 351
+ RH+Y R P G+ +++GG KR GV P+HF S+
Sbjct: 61 LARHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSA 96
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 238 QHSVHKTNQGHREPVP*N--ELSLPSPYDLEPSLCRSFSSER 119
QH+ NQGHR P P + +LS P P + SL S R
Sbjct: 82 QHNRVGNNQGHRSPSPTSSPQLSSPPPSTMVDSLSTHSESSR 123
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 108 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 197
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 108 QNCS-RSLEKDRQSEGSRSYGLGKDSSFQGT 197
+NCS + E+DR S G SYG + F GT
Sbjct: 159 ENCSAKDEERDRDSGGVSSYGNKRSDEFCGT 189
>Z82051-3|CAB04817.1| 337|Caenorhabditis elegans Hypothetical
protein T23D5.6 protein.
Length = 337
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 147 HFADLFQVSGYSFD--DFVLFNILHCNGTHHVYF 52
H LF + G +F +FVL+ +LH + +V+F
Sbjct: 43 HLILLFSILGIAFASLEFVLYPVLHSHNAGYVFF 76
>Z82051-10|CAB04822.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 206 MTLIGFMYAVLLYC 247
M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225
>Z70684-10|CAA94602.2| 684|Caenorhabditis elegans Hypothetical
protein F28D1.9 protein.
Length = 684
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 82 KDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAIL 246
+DVE+ K V +L+++G + P + + + P+D D +RC L
Sbjct: 628 QDVEKTGTFKLVKTNLQRLGIMDAPSDSIYIYNSENRNFVPFDND---LRCKVSL 679
>AL021175-11|CAA15973.2| 577|Caenorhabditis elegans Hypothetical
protein T23D5.2 protein.
Length = 577
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 206 MTLIGFMYAVLLYC 247
M ++GF YAV++YC
Sbjct: 212 MIILGFQYAVIIYC 225
>U61947-7|AAB03137.1| 735|Caenorhabditis elegans Hypothetical
protein C06G3.9 protein.
Length = 735
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 208 DPDWFYVRCAAILRHIYIRSP-VGVKTVTRIFGGRKRNGVTPSHFW 342
D D Y R + +R+ + + +T I +KR G+TP FW
Sbjct: 170 DGDTIYTSSFLNARQLVLRAILIALTKITPISTIQKRVGLTPKRFW 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,679,127
Number of Sequences: 27780
Number of extensions: 144567
Number of successful extensions: 374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -