Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H13
(288 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.044
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 0.31
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 2.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 2.9
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 24 5.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 5.0
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 24 5.0
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 23 6.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 23 8.8
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 23 8.8
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 30.7 bits (66), Expect = 0.044
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 40 VVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQITDIKIYLAGHTSKYPYPILYDTVLKL 219
V+S + + N + L+++ +D +KS Q I I K PY IL ++ +L
Sbjct: 492 VLSISSDEGNIVPGSKSIQILLSK-IDLVKSPQGRYIVIGTCHSIEKIPYEILSESFFEL 550
Query: 220 RSSELHFDDK 249
+ SEL D++
Sbjct: 551 KFSELEMDER 560
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 0.31
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 34 DIVVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQITDIKIYL 162
DIV F ++ K + +T+LVD SK +T+I YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 2.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 28 QADIVVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQ 138
+ DIV+ E S++ + + MP++ L+++LKS Q
Sbjct: 248 EEDIVIMLEIC-SSQLPFVEQYMPILPLLLERLKSLQ 283
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 2.9
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 22 NKQADIVVSF-----ETTQSNEQSYKDLVMPLITQLVDKLKSKQITDIKIYLAGH 171
++Q DI+ + +TT KD VM ++ QL K+ + + T+I + GH
Sbjct: 1147 DRQVDILTALFFTLKDTTSEVPTVCKDHVMDVLKQLFRKIYASKDTEIAPGILGH 1201
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 23.8 bits (49), Expect = 5.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 55 FRRRRQYLLACLALVP 8
FRR+ YL+ C L+P
Sbjct: 277 FRRQHSYLITCPELIP 292
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.8 bits (49), Expect = 5.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 76 SYKDLVMPLITQLVDKLKSKQITDIKIYLAGHTSKYP 186
S+K +V PL TQL + + ITD++ + T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 23.8 bits (49), Expect = 5.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 192 YLIRYCFETKELRTTFRRQGALRAY 266
YL+ C+ T LRT + A R Y
Sbjct: 228 YLLAVCYGTGALRTEINEKEAYRLY 252
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 195 DRVGI-FRCVSREVNLNVC 142
D V I FRC S+E +LN C
Sbjct: 97 DNVSICFRCGSKEHSLNAC 115
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 30 SRYCRLLRNYSE 65
SRYCRL+R + E
Sbjct: 765 SRYCRLVRRWDE 776
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 174 CVSREVNLNVCDLLAL 127
CV+ + NVCDLL++
Sbjct: 499 CVTTDEAFNVCDLLSI 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,543
Number of Sequences: 5004
Number of extensions: 18135
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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