Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H13
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    27   3.2  
06_01_0589 + 4235361-4235433,4236484-4237187,4237584-4237805,423...    26   4.2  
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926...    26   5.6  
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224...    25   7.4  
04_04_0236 + 23825368-23825763,23826229-23828667                       25   9.8  
02_01_0756 - 5612722-5613906                                           25   9.8  

>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 157 YLAGHTSKYPYPILYDTVLKLRSS 228
           YLAG     P P+L+D +L + SS
Sbjct: 172 YLAGDNPDGPVPLLFDHILAISSS 195


>06_01_0589 +
           4235361-4235433,4236484-4237187,4237584-4237805,
           4237900-4238559
          Length = 552

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 DTVLKLRSSELHFDDKERYERM 267
           DT+  L SS+L  +DKE + R+
Sbjct: 340 DTITSLNSSQLSSEDKENFSRV 361


>12_02_0284 -
           16791153-16791212,16791392-16791925,16792266-16792637,
           16793754-16794105,16794107-16794795,16821179-16821574
          Length = 800

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 70  EQSYKDLVMPLITQLVDKLKSKQITDIKIYLAGHTSKYPYPILYDTVLKLR 222
           ++  KD   P+IT  +   +    T ++  LA  + +YP  I  D  +K+R
Sbjct: 340 QEKKKDPGCPMITCSIGAQQFDNPTPMRFQLADSSVRYPAGIAEDAPVKIR 390


>02_03_0093 -
           15120951-15121344,15121658-15121953,15122119-15122419,
           15123233-15123628,15123883-15124067
          Length = 523

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 142 TDIKIYLAGHTSKYPYPILYDTVLKLRSSELHFD 243
           T +++ LA  + +YP  I+ D  +K+R   + FD
Sbjct: 90  TPMRLQLADSSVRYPVGIVEDVPVKIRDFFIAFD 123


>04_04_0236 + 23825368-23825763,23826229-23828667
          Length = 944

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 157 YLAGHTSKYPYPILYDTVLKLRSSELHFDDKERYERMAFVKTG 285
           Y+   T+   +   +DT +KLRS    +DD   +++   V +G
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSG 630


>02_01_0756 - 5612722-5613906
          Length = 394

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 94  MPLITQLVDKLKSKQITDIKIYLAGHT 174
           +P  T++V  L+  +I ++KIY A HT
Sbjct: 46  LPPPTEVVKLLRMARIKNVKIYDADHT 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,877,968
Number of Sequences: 37544
Number of extensions: 109229
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)