Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H13
         (288 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical p...    26   3.8  
Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical p...    26   3.8  
Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...    26   3.8  
U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical pr...    26   5.0  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    26   5.0  
U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidan...    25   6.6  
U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidan...    25   6.6  
AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.      25   6.6  
AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b prote...    25   6.6  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    25   8.7  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    25   8.7  
D14968-1|BAA20996.1|  397|Caenorhabditis elegans kinesin-like pr...    25   8.7  

>Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical
           protein C50B6.14b protein.
          Length = 420

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 4   NSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQITDI 150
           N   GP++  D++   +  +  ++  KDL +  I  LV K     I  I
Sbjct: 365 NIGNGPSRFTDLIGIIDVLERQQRMQKDLHLLYIAPLVAKTPKDNIVQI 413


>Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical
           protein C50B6.14a protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 4   NSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQITDI 150
           N   GP++  D++   +  +  ++  KDL +  I  LV K     I  I
Sbjct: 344 NIGNGPSRFTDLIGIIDVLERQQRMQKDLHLLYIAPLVAKTPKDNIVQI 392


>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 40  VVSFETTQSNEQSYKDLVMPLITQLVDKLKS-KQITD--IKIYLAGHTSKYPYPILYDT 207
           V  + T  ++E    D + P+I  L+D+L S K IT+   ++    + S +  P  YDT
Sbjct: 180 VFDYSTNSASEWKEADPIPPVINSLIDRLISDKYITERPDQVTANVYESGHGIPSHYDT 238


>U97008-4|AAB52312.1|  430|Caenorhabditis elegans Hypothetical
           protein C03G6.12 protein.
          Length = 430

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 4   NSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDKLKSKQI 141
           N   GP   A+++  F   ++ ++ +KDL +  +  L++K   + I
Sbjct: 376 NYTDGPGHFAELIGIFNLLETQQRMFKDLHIMYVVPLMNKFSRELI 421


>U80450-6|AAB37831.1|  544|Caenorhabditis elegans Hypothetical
           protein M01E11.2 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 4   NSARGPNKQADIVVSFETTQSNEQSYKDL-VMPLITQLVDKLKSKQITDIK 153
           +S  G  K  DI+ + E  QSN  +  D+ V  L+ QL  K++  +   +K
Sbjct: 34  SSQAGQPKPEDILAALEADQSNYVALDDVQVKKLVIQLDKKMRLNREQRVK 84


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = +1

Query: 79  YKDL---VMPLITQLVDKLKSKQITDIKI 156
           YKD+   ++P+ TQL++KL  K I++ K+
Sbjct: 778 YKDMDYAILPVDTQLIEKLIEKYISNGKV 806


>U70851-2|AAM97996.1|  671|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform a protein.
          Length = 671

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LNSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVD 120
           LN+  G  K      ++    + EQ Y D+V PL+  +++
Sbjct: 10  LNAPDGAAKDFTFDGAYFMDSTGEQIYNDIVFPLVENVIE 49


>U70851-1|AAM97997.1|  699|Caenorhabditis elegans Osmotic avoidance
           abnormal protein3, isoform b protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LNSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVD 120
           LN+  G  K      ++    + EQ Y D+V PL+  +++
Sbjct: 38  LNAPDGAAKDFTFDGAYFMDSTGEQIYNDIVFPLVENVIE 77


>AF149285-1|AAF99084.1|  672|Caenorhabditis elegans Osm-3 protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LNSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVD 120
           LN+  G  K      ++    + EQ Y D+V PL+  +++
Sbjct: 10  LNAPDGAAKDFTFDGAYFMDSTGEQIYNDIVFPLVENVIE 49


>AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b protein
           protein 18 protein.
          Length = 306

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 22  NKQADIVVSFETTQSNEQSYKDLVMPLIT--QLVDKLKSKQITDIKIYLAGHTSKYPYPI 195
           N   +IV  + + Q+   S  +L +P IT  Q ++ + S  I + K+ L    S+     
Sbjct: 79  NPDQEIVRIYNSEQNG--SITELNLPGITEKQWIEHISSVLIQNRKVVLISSLSERKIED 136

Query: 196 LYDTVLKLRSSELH 237
           +YD++ +L    LH
Sbjct: 137 IYDSIKELDIVALH 150


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 283 QFSQKPYARSAPCRRNVVRSSLVSKQ 206
           +F +KP  +S+P  ++ V+SS + K+
Sbjct: 680 KFEKKPPVKSSPVNKSPVKSSPIKKE 705


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LNSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVD 120
           LN+  G  K      ++   +  EQ Y D+V PL+  +++
Sbjct: 81  LNAPDGAAKDFTFDGAYFMIRPGEQIYNDIVFPLVENVIE 120


>D14968-1|BAA20996.1|  397|Caenorhabditis elegans kinesin-like
           protein protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 1   LNSARGPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVD 120
           LN+  G  K      ++   +  EQ Y D+V PL+  +++
Sbjct: 81  LNAPDGAAKDFTFDGAYFMIRPGEQIYNDIVFPLVENVIE 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,033,894
Number of Sequences: 27780
Number of extensions: 99822
Number of successful extensions: 255
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)