Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H12
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    70   6e-14
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    66   1e-12
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   2.2  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   2.9  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    25   2.9  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    24   5.0  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    23   6.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    23   6.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    23   8.8  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 70.1 bits (164), Expect = 6e-14
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MGIDI   H RK +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 197 ISLFRVA--RHMKKLTREGLIAVVVGTVSNDVR 289
           IS+ ++A     K  + EG   V+VGTV++D R
Sbjct: 61  ISISKIAALTSRKSASLEGKTTVIVGTVTDDER 93


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MGIDI   H +K +R++  S++V               T+++FN+ IL+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 197 ISLFRVA--RHMKKLTREGLIAVVVGTVSNDVR 289
           IS+ ++A     K  + +    VVVGTV++D R
Sbjct: 61  ISISKIAALTSRKSASSQNKTTVVVGTVTDDER 93


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 113 CTVLPIVSSTHPET*LRCAELSCRVYD*CRYPSLV 9
           C+V  I  STHPE     A+ +C      R+P ++
Sbjct: 48  CSVFSISLSTHPEW-AELADRACETMKTLRHPCII 81


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 122 PSICTVLPIVSSTHPET*LRCAELSCRVYD 33
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 135 FVRLAKYLYSFTN 97
           F  LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 169 VYEPYQPTSDFFVPCGTPHEEADARGFDRCSRWHS 273
           VY    P +DF   C   HE ++ +    C+  H+
Sbjct: 134 VYAELSPVTDFREACCRQHETSECQRGGLCNFMHA 168


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 284 HHWRLCQRLQRSNPRASASSCG 219
           HH RLC+ L R +      +CG
Sbjct: 178 HHQRLCELLPRVSVLEFGGACG 199


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 91  ETIGKTVQILG*THECQVQPDHPTEIVYEPYQPTSDFFVPCGTPHEEADA 240
           E   KT+ +   T+  QV   HP  I+   Y+  +  F  C   HEE D+
Sbjct: 69  ELCNKTITVC--TNHYQVI-GHPISIIGSNYERNALIFNMCMIFHEEEDS 115


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 85  HILRLNFGAPNFPVVFMIDV 26
           H+L  NF  PN P    +D+
Sbjct: 378 HVLTFNFATPNTPHPDQLDI 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,459
Number of Sequences: 5004
Number of extensions: 18990
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)