Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H12
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 72 9e-14
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 69 5e-13
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 63 3e-11
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 29 0.60
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 1.4
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 27 1.8
08_02_0594 + 19089094-19090049,19090673-19091162 27 2.4
02_03_0371 - 18267986-18268378 27 2.4
03_05_0433 - 24245560-24245946 26 5.6
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 25 7.4
02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385... 25 7.4
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 25 9.8
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 25 9.8
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 25 9.8
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 71.7 bits (168), Expect = 9e-14
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 17 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 193
MGID + ++K +RT KS DV T + FN +ILRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 194 PISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
P+SL R+ R M+ +E IAV+VGTV++D R
Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVGTVTDDKR 90
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 69.3 bits (162), Expect = 5e-13
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 17 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 193
MGID + ++K +RT +S DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 194 PISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
P+SL R+A+ M+ E IAV+VGTV++D R
Sbjct: 61 PLSLRRLAKFMEG-KEENNIAVIVGTVTDDKR 91
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 63.3 bits (147), Expect = 3e-11
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Frame = +2
Query: 17 MGID-INHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRP 193
MGID + ++K +RT +S+DV T + FN +IL+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 194 PISLFRVARHM--KKLTREGL----IAVVVGTVSNDVR 289
P+S+ R+ R M K R + IAV+VGTV++D R
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKR 98
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 29.1 bits (62), Expect = 0.60
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 226 HVACHTEQRNRRSVDTAHKQSP 161
HV C ++ RRS + AHKQ+P
Sbjct: 682 HVCCKAKEMLRRSSELAHKQNP 703
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 278 WRLCQRLQRSNPRASASSC 222
WRLC R R+ P + +SSC
Sbjct: 927 WRLCSRNDRNAPSSPSSSC 945
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 265 NDYSDQTLARQLLHVACHTEQRNRRSVDTAH 173
N D+ LA ++H EQRN+R +AH
Sbjct: 882 NALDDKNLAEIIMHATKEGEQRNQREQRSAH 912
>08_02_0594 + 19089094-19090049,19090673-19091162
Length = 481
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 259 YSDQTLARQLLHVACHTEQRNRRSVDTAHK-QSP*DDLVELGIR 131
Y + QLL CH++ R R + K QS DD+++L R
Sbjct: 338 YQNPAEQAQLLEALCHSQTRAREAEMAGKKAQSEKDDVIKLFFR 381
>02_03_0371 - 18267986-18268378
Length = 130
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 11 RGMGIDINHKHDRKVRRTEVKSQDV 85
R G+++NH+ D ++R E +QDV
Sbjct: 42 REHGVEVNHRGDEEIRVPEGPNQDV 66
>03_05_0433 - 24245560-24245946
Length = 128
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 246 PSRVSFFMWRATRNK 202
PSRV FFMW A + K
Sbjct: 107 PSRVRFFMWLALQGK 121
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 249 KPSRVSFFMWRATRNKEIG 193
+PS+V FFMW A R G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>02_01_0531 -
3856343-3856373,3856426-3856506,3857972-3858097,
3858196-3858326,3858832-3858855,3859429-3859482,
3859967-3860136,3860322-3860380,3861274-3861390,
3861481-3861611,3861720-3861770,3862305-3862481
Length = 383
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 134 NAKFNQIILRRLFMSRINRPPISLFRVARHM--KKLTREGLIAV 259
N +F+ RR ++SR+ ++ ++RH+ K +T E L A+
Sbjct: 216 NVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL 259
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 265 NDYSDQTLARQLLHVACHTEQRNRRSVDTAHKQSP 161
++ SDQ + R+L V +Q N+R D H P
Sbjct: 757 SNLSDQQVLRRLKKVRPEIQQHNKRPEDYGHCSVP 791
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 276 ETVPTTTAIKPSRVSFFMWRATR-NKEIGG 190
E P TTA KP RV F + + T+ ++E+ G
Sbjct: 673 EINPNTTAPKPKRVRFALPKDTKIDREVRG 702
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 276 ETVPTTTAIKPSRVSFFMWRATRNKEIGG 190
E + T AIKPS+V ++ +NK + G
Sbjct: 354 EVLKNTQAIKPSKVLVAAAKSNKNKFVSG 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,224
Number of Sequences: 37544
Number of extensions: 126229
Number of successful extensions: 304
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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