Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H12
         (289 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...   100   1e-21
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...   100   1e-21
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...   100   1e-21
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...   100   1e-21
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    98   4e-21
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...    71   5e-13

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/91 (53%), Positives = 60/91 (65%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           +SL R+ R MK   RE   AVVVGT+++DVR
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVR 91


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/91 (53%), Positives = 60/91 (65%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           +SL R+ R MK   RE   AVVVGT+++DVR
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVR 91


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/91 (53%), Positives = 60/91 (65%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           +SL R+ R MK   RE   AVVVGT+++DVR
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVR 91


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/91 (53%), Positives = 60/91 (65%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           +SL R+ R MK   RE   AVVVGT+++DVR
Sbjct: 61  LSLSRMIRKMKLPGRENKTAVVVGTITDDVR 91


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 48/91 (52%), Positives = 59/91 (64%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MG+DI H  DRKVRR E KSQD+               TN+ FNQ++L+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           + L R+ R MK   RE   AVVVGT+++DVR
Sbjct: 61  LCLSRMIRKMKLPGRENKTAVVVGTITDDVR 91


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +2

Query: 131 TNAKFNQIILRRLFMSRINRPPISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           TN+ FNQ++L+RLFMSR NRPP+SL R+ R MK   RE   AVVVGT+++DVR
Sbjct: 16  TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVR 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,722,514
Number of Sequences: 237096
Number of extensions: 706749
Number of successful extensions: 1362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 76,859,062
effective HSP length: 72
effective length of database: 59,788,150
effective search space used: 1375127450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)