Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H12
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    80   2e-16
AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    27   2.2  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF125450-1|AAD12815.1|  188|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    25   6.6  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    25   8.7  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    25   8.7  
AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 41/91 (45%), Positives = 53/91 (58%)
 Frame = +2

Query: 17  MGIDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPP 196
           MGIDINHKHDR  RRT  KS++                T  KFN I+L+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 197 ISLFRVARHMKKLTREGLIAVVVGTVSNDVR 289
           +SL ++AR ++K   E    V + TV++D R
Sbjct: 61  LSLAKLARAVQKAGNENKTVVTLSTVTDDAR 91


>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 130 HECQVQPDHPTEIVYE 177
           HECQVQ D PT ++ E
Sbjct: 575 HECQVQNDEPTALLRE 590


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/17 (52%), Positives = 16/17 (94%)
 Frame = +3

Query: 141 SSTRSSYGDCL*AVSTD 191
           SSTR+S+GDC+ ++S++
Sbjct: 569 SSTRNSFGDCMWSISSE 585


>AF125450-1|AAD12815.1|  188|Caenorhabditis elegans Hypothetical
           protein Y39F10A.1 protein.
          Length = 188

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 280 IGDCANDYSDQTLARQLLHVACHT 209
           +  CA D+SD ++     H+ CHT
Sbjct: 65  LSGCAEDFSDYSIRPHDDHLLCHT 88


>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 114 DTWLDARMPSSTRSSYGDCL*AVSTDLRFLCSVWH 218
           DT L     +S+  SYG  L ++ T    +C VW+
Sbjct: 292 DTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVWY 326


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 114 DTWLDARMPSSTRSSYGDCL*AVSTDLRFLCSVWH 218
           DT L     +S+  SYG  L ++ T    +C VW+
Sbjct: 349 DTRLTDAFWNSSAQSYGRYLWSMMTSWAIICDVWY 383


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 21  VSTSIINTTGKFGAPKLSLRMCT*DYW*NCTDTWLDARMP 140
           +S S  N  GK  +P  + R C  D   +  D WL    P
Sbjct: 782 ISCSFPNRPGKLSSPLSNYRQCIFDPQDDGRDYWLSGPAP 821


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 200  SLFRVARHMKKLTREGLIAVVVGTVSNDV 286
            SLFR+++    L RE  I V+   +SND+
Sbjct: 1204 SLFRMSQDESPLARESTILVLSHLMSNDM 1232


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 200  SLFRVARHMKKLTREGLIAVVVGTVSNDV 286
            SLFR+++    L RE  I V+   +SND+
Sbjct: 1160 SLFRMSQDESPLARESTILVLSHLMSNDM 1188


>AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK6.6 protein.
          Length = 324

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 79  GCVLETIGKTVQILG*THECQVQPDHPTEIVYEPYQPT 192
           G VL T+   V +L    +  V P H   ++++P Q T
Sbjct: 174 GSVLTTVFCFVALLSTPFDATVTPSHEQPLLFQPSQVT 211


>AF003142-6|AAK73887.1|  653|Caenorhabditis elegans Hypothetical
           protein F57C9.4a protein.
          Length = 653

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 FMSRINRPPISLFRVARHMKKLTREGLIAVVVG 268
           F    +RP IS+FR  +  ++ T+E   A+++G
Sbjct: 347 FCKTTHRPNISIFRFYKDSEECTKEENEAIMMG 379


>AF003142-4|AAK73888.1|  856|Caenorhabditis elegans Hypothetical
           protein F57C9.4b protein.
          Length = 856

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 170 FMSRINRPPISLFRVARHMKKLTREGLIAVVVG 268
           F    +RP IS+FR  +  ++ T+E   A+++G
Sbjct: 347 FCKTTHRPNISIFRFYKDSEECTKEENEAIMMG 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,504,371
Number of Sequences: 27780
Number of extensions: 109620
Number of successful extensions: 325
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)