Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H11
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   157   5e-40
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   155   2e-39
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    30   0.10 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   0.72 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    27   0.95 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   2.2  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    24   6.7  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    23   8.8  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  157 bits (380), Expect = 5e-40
 Identities = 71/98 (72%), Positives = 85/98 (86%)
 Frame = +2

Query: 14  KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYALLA 193
           KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRKSE+EYYA+L+
Sbjct: 18  KKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLS 77

Query: 194 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 307
           +  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 78  RCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  155 bits (376), Expect = 2e-39
 Identities = 70/101 (69%), Positives = 86/101 (85%)
 Frame = +2

Query: 5   EEQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYA 184
           ++ KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+EYYA
Sbjct: 7   KKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYA 66

Query: 185 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 307
           +L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 67  MLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.9 bits (64), Expect = 0.10
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 8   EQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 133
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -3

Query: 145 IPGDDHQLSFPLSECLQSLFVA 80
           IP DD  L FPL ECL S+ VA
Sbjct: 597 IPDDDPNL-FPLFECLSSVAVA 617


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 116 KAKLVIIARNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 250
           ++ +VI+++   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 80  GYKQTLKTLRQGKAKLVIIARNAPPL 157
           G K+ +K +R+G+  LVI+A +  P+
Sbjct: 57  GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 327  VASGNVVMMSESPGSVIARVHTL*YFPQAVPSSILFPL*WWTPVLARRA 181
            ++S NV+ + + PG V +RV  +      +    +    W TPV+  +A
Sbjct: 1027 ISSTNVITLRDQPGYVGSRVSLMNSLLDFIEGRTIVNGIWETPVIMVQA 1075


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 14  KKTIESINSRLALVMKSGKYCLGY 85
           ++T+E       +V K G++C+GY
Sbjct: 353 RRTVERQAVETHIVAKPGEFCVGY 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,557
Number of Sequences: 5004
Number of extensions: 26815
Number of successful extensions: 65
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)