Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H11
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 165 5e-42
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 163 4e-41
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 161 2e-40
01_01_0981 + 7766025-7766753 31 0.16
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 30 0.37
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 30 0.49
03_05_0830 + 28034179-28035492 29 1.1
07_03_1085 - 23851852-23853165 27 4.6
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039... 27 4.6
03_01_0010 - 94931-96034,96117-96442,97154-97283 27 4.6
09_04_0339 + 16812809-16812850,16813099-16813527 26 8.0
09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352 26 8.0
02_02_0310 - 8842286-8843314 26 8.0
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 26 8.0
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 165 bits (402), Expect = 5e-42
Identities = 73/103 (70%), Positives = 85/103 (82%)
Frame = +2
Query: 11 QKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYALL 190
QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRKSEIEYYA+L
Sbjct: 48 QKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIEYYAML 107
Query: 191 AKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 319
K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 108 GKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 163 bits (395), Expect = 4e-41
Identities = 72/104 (69%), Positives = 84/104 (80%)
Frame = +2
Query: 14 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYALLA 193
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRKSEIEYYA+L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 194 KTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 325
K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 161 bits (390), Expect = 2e-40
Identities = 72/103 (69%), Positives = 87/103 (84%)
Frame = +2
Query: 5 EEQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYA 184
++ KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEIEYYA
Sbjct: 5 KKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYA 64
Query: 185 LLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 313
+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 65 MLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>01_01_0981 + 7766025-7766753
Length = 242
Score = 31.5 bits (68), Expect = 0.16
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 227 YCFHCSGGHLFWLGEHNILSPTSSEEA 147
+C HC H W G H+I+ P + + A
Sbjct: 40 FCSHCCSSHHLWPGHHHIVVPVTVDAA 66
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 30.3 bits (65), Expect = 0.37
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +2
Query: 44 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEYYALLAKTG--VH 208
L LV ++ + CL G K+ +K++R+G+ L IIA N P+ I + +L + +
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPY 90
Query: 209 HYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 304
Y + +L TA K C L +T P ++
Sbjct: 91 VYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 46 GSGYEVWQILLGLQTNFEDTQTRES*VGDHRQECASSEEVGDRILCSPSQNRCPPLQWK 222
G YE+ I LG + DT+T + GD E SSE ++ PS+ R W+
Sbjct: 993 GKIYEMMTIALGGRWGRSDTETEAATTGDASTETGSSEATVTEVI-EPSEVRPESDPWR 1050
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 62 SGKYCLGYKQTLKTLRQGKAKLVIIARN 145
+GKY G TLKTL G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>07_03_1085 - 23851852-23853165
Length = 437
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 62 SGKYCLGYKQTLKTLRQGKAKLVIIARN 145
+GKY G TLK L G + +I+ N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>07_02_0030 +
12002825-12003510,12003654-12003708,12003911-12003996,
12004093-12004433,12004512-12004699,12004776-12004962,
12005035-12005139,12005202-12005239,12005369-12005653
Length = 656
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 98 KTLRQGKAKLVIIARNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKY 256
K RQ K +R P +RKS ++ L TG+ +G++ E G G +
Sbjct: 252 KQPRQANPKKKTSSRPMPKIRKSSRSFWKRLRPTGME--TGSSKETGPTAGNH 302
>03_01_0010 - 94931-96034,96117-96442,97154-97283
Length = 519
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 162 FLRGGAFLAMITNLAFPCLSVFKVCL 85
FL G FLAM+ +L F +F CL
Sbjct: 437 FLIGQTFLAMLCHLKFATFFLFAACL 462
>09_04_0339 + 16812809-16812850,16813099-16813527
Length = 156
Score = 25.8 bits (54), Expect = 8.0
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = +2
Query: 8 EQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIARNAPPLRKSEIEY--- 178
E K I+ + + + L K+ + + L ++ APP +KSEIE+
Sbjct: 26 ECKAPIDKCLTEASQAINKALEALMDKRLTEASQANNKALDVVVVAAPPAKKSEIEHAMW 85
Query: 179 -YALLAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 283
+ A + G+ +L TA Y V +T
Sbjct: 86 KQRMFAFAALGMAEGDEKKLATASLAYKNVANAVLT 121
>09_04_0116 + 14805972-14806511,14807095-14807232,14809906-14810352
Length = 374
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -3
Query: 235 ELNIVSTVVVDTCFG*ESI---IFYLRLPQRRRIPGDDHQLSFPL 110
+L + +TVV D +S+ +F L +RRR PGDD SF L
Sbjct: 199 KLKMATTVVRDQDLELDSLSFSVFCWFLCRRRRPPGDDDAESFRL 243
>02_02_0310 - 8842286-8843314
Length = 342
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 232 ARYCLRKILQSMYSSNHRPWRF*HHNN 312
AR +RK L S +HR RF HH++
Sbjct: 282 ARRWIRKALMSSRMHHHRGCRFHHHHH 308
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 109 TRES*VGDHRQECASSEEVGDRILCSPSQNRC 204
T+ES V ++ + EE R+LCS S N C
Sbjct: 224 TKESSVHVQEEDNVNLEENAARMLCSLSDNMC 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,610,885
Number of Sequences: 37544
Number of extensions: 188742
Number of successful extensions: 483
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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