Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H11
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   8.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 185 EHNILSPTSSEEAHS 141
           +HN  SPT S   HS
Sbjct: 58  QHNSPSPTGSSPQHS 72


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +2

Query: 248 GKYYRVCT 271
           GK++RVCT
Sbjct: 190 GKFHRVCT 197


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 181 CSPSQNRCPPLQWKQ 225
           C P+Q     +QW++
Sbjct: 25  CQPTQRTMSKIQWRK 39


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 5/20 (25%), Positives = 8/20 (40%)
 Frame = -2

Query: 197 FWLGEHNILSPTSSEEAHSW 138
           +W+     L P    E + W
Sbjct: 347 YWMETRGFLQPVCQNEMNKW 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,493
Number of Sequences: 438
Number of extensions: 1769
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)