Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H10
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   105   8e-25
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   105   8e-25
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   2.5  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    24   3.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    24   3.2  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    23   5.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    23   7.5  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    23   7.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    23   7.5  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    23   7.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    23   9.9  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    23   9.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   9.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  105 bits (253), Expect = 8e-25
 Identities = 45/68 (66%), Positives = 54/68 (79%)
 Frame = +3

Query: 66  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN P YRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 246 TCKVAYSR 269
           TC++  SR
Sbjct: 61  TCQIVSSR 68


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  105 bits (253), Expect = 8e-25
 Identities = 45/68 (66%), Positives = 54/68 (79%)
 Frame = +3

Query: 66  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN P YRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 246 TCKVAYSR 269
           TC++  SR
Sbjct: 61  TCQIVSSR 68


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 81  VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 200
           + K +    +YQ   K + E  T  Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 231 ITVQSVGSLECCICFYPGQRGVCEHSSQFFPHDAS 127
           I +     L C  C +P  +G+C+  S   P D++
Sbjct: 62  IKIGDYAFLYCSNCKFPHIKGLCQICSNSHPDDSA 96


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
            Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 90   NKQYFKRYQV--KFKRRREGKTDYYARKRLVVQDKNKYNTP 206
            +  Y + + V  ++KRR    TD+   +  V  D++K++ P
Sbjct: 882  SSSYLEEWNVFAQYKRRESNATDFEDFRSQVGDDESKFDEP 922


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 114 QVKFKRRREGKTDYYARKRLV---VQDKNKYNTPNYRLIVRLSNKDVT 248
           Q+K K+ ++ K+    RKRLV    +++N+ +  ++ L    SN D++
Sbjct: 285 QIKIKKSKKKKSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSDLS 332


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 66  MGFVKVVKNKQYFKRYQVKFKR 131
           M FVK +KN ++++R   K  R
Sbjct: 309 MEFVKFLKNPKFYERLGAKIPR 330


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 123  FKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLS-NKDVT 248
            FKR+ + + D  A KR++ +D +K  +    ++   S N DV+
Sbjct: 1023 FKRKFKNRKDKAAVKRMLEEDSSKQLSSGRDVVAPTSVNHDVS 1065


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 117  VKFKRRREGKTDYYARKRLVVQDKNKYNT 203
            V+ +  RE  ++YY   ++ V +K +Y+T
Sbjct: 1000 VQSQTARENLSNYYQALQMTVSEKFEYDT 1028


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 75  VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRL 230
           + +V   Q  KR     +R     + Y+A K  + + +  +NT N    VRL
Sbjct: 115 IVLVAEAQQAKRSN-SLRRTHSRSSSYFAVKSTIDRVRGDFNTGNINHCVRL 165


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 215 SVVWSVVFVFILDNEAFASIVVS 147
           S+ W VVFVFI  N + A  + S
Sbjct: 245 SLGWGVVFVFIPSNPSKARFLSS 267


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 153  YYARKRLVVQDKNKYNTPNYR 215
            YY  +   VQ+  KYN  +YR
Sbjct: 1184 YYPEEYHYVQEIQKYNVTDYR 1204


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 249

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 63 SKIFLKSKYPHSAHR 19
          S IFLK++YP S +R
Sbjct: 45 SSIFLKNRYPISINR 59


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 170  PRCPG*KQIQHSKLPTDC 223
            P CP  ++IQH+    DC
Sbjct: 960  PPCPTDEEIQHTLCTIDC 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,934
Number of Sequences: 5004
Number of extensions: 19578
Number of successful extensions: 48
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)