Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H10
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...    92   5e-20
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    90   3e-19
08_01_0200 + 1632883-1633913,1634620-1634677                           27   2.7  
12_02_1131 - 26358339-26360609                                         26   3.6  
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008...    25   6.3  
05_01_0380 + 2978256-2979284                                           25   6.3  
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    25   8.3  
02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270     25   8.3  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 42/66 (63%), Positives = 50/66 (75%)
 Frame = +3

Query: 69  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDVT 248
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTP YR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 249 CKVAYS 266
            ++ Y+
Sbjct: 60  AQIVYA 65


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 41/66 (62%), Positives = 49/66 (74%)
 Frame = +3

Query: 69  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDVT 248
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTP YR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 249 CKVAYS 266
            ++ Y+
Sbjct: 60  AQIVYA 65


>08_01_0200 + 1632883-1633913,1634620-1634677
          Length = 362

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 219 SVGSLECCICFYP-GQRG 169
           +VG  + CICFYP GQ G
Sbjct: 33  TVGGYDWCICFYPEGQGG 50


>12_02_1131 - 26358339-26360609
          Length = 756

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 243 HLYWITVQSVGSLECCICF 187
           HL+WIT +SVG  +  + F
Sbjct: 221 HLHWITTKSVGDADAIMSF 239


>09_02_0523 +
           10196272-10196375,10196551-10197488,10200247-10200896,
           10201003-10201746
          Length = 811

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCKV 257
           RK+L+++ KN  +       VRL NKD+  K+
Sbjct: 256 RKKLILRKKNHQHETVLHEAVRLGNKDLIDKL 287


>05_01_0380 + 2978256-2979284
          Length = 342

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 231 ITVQSVGSLECCICFYP 181
           +TV+   +LEC +CF P
Sbjct: 65  VTVEDADALECGVCFLP 81


>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
            9614416-9614501,9615519-9615678,9616122-9617438,
            9619463-9620428,9621452-9621766
          Length = 1199

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 87   KNKQYFKRYQVKFKRRREG 143
            +NK+ FK  +VKFK+ R G
Sbjct: 1039 ENKRVFKNIKVKFKQGRTG 1057


>02_05_0395 - 28596957-28597400,28598506-28598586,28600049-28600270
          Length = 248

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 201 CCICFYPGQRGVC 163
           CC CF PG+R  C
Sbjct: 218 CCCCFGPGERLSC 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,033,350
Number of Sequences: 37544
Number of extensions: 112779
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)