Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H10
(270 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 132 1e-31
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 130 8e-31
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 130 8e-31
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 130 8e-31
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 130 8e-31
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 130 8e-31
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 130 8e-31
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 130 8e-31
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 29 2.0
Y12510-1|CAA73112.1| 372|Homo sapiens UDPGal:GlcNAc b1,4 galact... 28 6.1
BC096821-1|AAH96821.1| 372|Homo sapiens UDP-Gal:betaGlcNAc beta... 28 6.1
AL357079-19|CAI16803.1| 306|Homo sapiens UDP-Gal:betaGlcNAc bet... 28 6.1
AL357079-18|CAI16802.1| 372|Homo sapiens UDP-Gal:betaGlcNAc bet... 28 6.1
AL139220-6|CAI19432.1| 306|Homo sapiens UDP-Gal:betaGlcNAc beta... 28 6.1
AL139220-5|CAI19431.1| 372|Homo sapiens UDP-Gal:betaGlcNAc beta... 28 6.1
AL137647-1|CAB70857.1| 224|Homo sapiens hypothetical protein pr... 28 6.1
AB024434-1|BAA75819.1| 372|Homo sapiens beta-1,4-galactosyltran... 28 6.1
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 132 bits (320), Expect = 1e-31
Identities = 56/72 (77%), Positives = 68/72 (94%)
Frame = +3
Query: 54 IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLS 233
+F +MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++
Sbjct: 4 LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVT 63
Query: 234 NKDVTCKVAYSR 269
N+D+ C++AY+R
Sbjct: 64 NRDIICQIAYAR 75
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 130 bits (314), Expect = 8e-31
Identities = 55/68 (80%), Positives = 65/68 (95%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTP YR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 246 TCKVAYSR 269
C++AY+R
Sbjct: 61 ICQIAYAR 68
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +3
Query: 216 LIVRLSNKDVTCKVAYSR 269
+IVR++N+D+ C++AY+R
Sbjct: 1 MIVRVTNRDIICQIAYAR 18
>Y12510-1|CAA73112.1| 372|Homo sapiens UDPGal:GlcNAc b1,4
galactosyltransferase protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 305 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 335
>BC096821-1|AAH96821.1| 372|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4- galactosyltransferase, polypeptide 2 protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 305 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 335
>AL357079-19|CAI16803.1| 306|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 2 protein.
Length = 306
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 239 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 269
>AL357079-18|CAI16802.1| 372|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 2 protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 305 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 335
>AL139220-6|CAI19432.1| 306|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 2 protein.
Length = 306
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 239 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 269
>AL139220-5|CAI19431.1| 372|Homo sapiens UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 2 protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 305 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 335
>AL137647-1|CAB70857.1| 224|Homo sapiens hypothetical protein
protein.
Length = 224
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 157 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 187
>AB024434-1|BAA75819.1| 372|Homo sapiens
beta-1,4-galactosyltransferase II protein.
Length = 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
R R++ D++K+N PN + ++ N +T K
Sbjct: 305 RYRMIKHDRDKHNEPNPQRFTKIQNTKLTMK 335
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,828,668
Number of Sequences: 237096
Number of extensions: 683334
Number of successful extensions: 1293
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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