Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H10
(270 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 122 3e-29
AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical ... 29 0.45
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 26 3.2
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 26 3.2
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 26 4.2
U41025-2|AAM51507.2| 356|Caenorhabditis elegans Hypothetical pr... 26 4.2
U41025-1|AAM51508.1| 407|Caenorhabditis elegans Hypothetical pr... 26 4.2
AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical... 25 5.6
Z81530-1|CAB04312.1| 290|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z77666-3|CAB01225.1| 698|Caenorhabditis elegans Hypothetical pr... 25 7.3
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 25 7.3
U00046-4|AAC47043.2| 308|Caenorhabditis elegans Serpentine rece... 25 7.3
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 25 9.7
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 25 9.7
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 25 9.7
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 25 9.7
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 122 bits (295), Expect = 3e-29
Identities = 54/68 (79%), Positives = 61/68 (89%)
Frame = +3
Query: 66 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDV 245
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTP YRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 246 TCKVAYSR 269
++AYS+
Sbjct: 61 VAQLAYSK 68
>AL132951-9|CAC44304.3| 553|Caenorhabditis elegans Hypothetical
protein Y67H2A.2a protein.
Length = 553
Score = 29.1 bits (62), Expect = 0.45
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 45 ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 158
I IF K+G V+ K +Q +R+Q+KF RE +T Y+
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKF-HEREDRTRYF 440
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 74 ESHFLKYS*NQNIRTVPTEPSCR 6
E HF K N+ +R PTEP CR
Sbjct: 647 EGHFAKDCQNERVRMEPTEP-CR 668
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 74 ESHFLKYS*NQNIRTVPTEPSCR 6
E HF K N+ +R PTEP CR
Sbjct: 647 EGHFAKDCQNERVRMEPTEP-CR 668
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 87 KNKQYFKRYQVKFKRRREGKTDYYARKR 170
KN+Q K YQ++ + R+ K D A R
Sbjct: 1646 KNQQIIKEYQIECEEARQAKEDIAALLR 1673
>U41025-2|AAM51507.2| 356|Caenorhabditis elegans Hypothetical
protein C01C4.3a protein.
Length = 356
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 63 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 167
+ GF+K+ ++KQ +R +KF R + K + R+
Sbjct: 23 RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 57
>U41025-1|AAM51508.1| 407|Caenorhabditis elegans Hypothetical
protein C01C4.3b protein.
Length = 407
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 63 KMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARK 167
+ GF+K+ ++KQ +R +KF R + K + R+
Sbjct: 136 RFGFIKLAEHKQSKQRIAIKFFPRPQTKQADFVRE 170
>AC090999-21|AAK26150.1| 530|Caenorhabditis elegans Hypothetical
protein Y82E9BR.2 protein.
Length = 530
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 111 YQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDVTC 251
+Q F TD +A ++LV+ K Y TPN + L+ K C
Sbjct: 256 FQQNFPPCHSEHTDEHAPQKLVISLKFAYKTPN---LTELTKKMCCC 299
>Z81530-1|CAB04312.1| 290|Caenorhabditis elegans Hypothetical
protein F36D1.1 protein.
Length = 290
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 162 RKRLVVQDKNKYNTPNYRLIVRLSNKDVTCKV 257
R R V+ DKN + NYR + ++VT ++
Sbjct: 17 RNRPVIWDKNYFGESNYRTLKTSCLREVTSEL 48
>Z77666-3|CAB01225.1| 698|Caenorhabditis elegans Hypothetical
protein K08E7.3 protein.
Length = 698
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 165 KRLVVQDKNKYNTPNYRLIVRLSN 236
KRL ++K++Y+ P Y I R N
Sbjct: 635 KRLECEEKDRYSGPRYAKITRSRN 658
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +3
Query: 75 VKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPNYRLIVRLSNKDVTCK 254
+K KN K+Y FK + + + K YN P +R +++ S+ +
Sbjct: 779 LKNSKNPNLLKQYDEIFKTQEASGIIESVTPNMKSETKYNYNMP-HRAVIKESSNTTKVR 837
Query: 255 VAY 263
V Y
Sbjct: 838 VVY 840
>U00046-4|AAC47043.2| 308|Caenorhabditis elegans Serpentine
receptor, class v protein1 protein.
Length = 308
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 174 VVQDKNKYNTPNYRLIVRLSNKDV 245
V +++ YNTP +RL + LS D+
Sbjct: 36 VERNRPPYNTPFFRLCIHLSIADI 59
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 24.6 bits (51), Expect = 9.7
Identities = 6/18 (33%), Positives = 13/18 (72%)
Frame = -1
Query: 231 ITVQSVGSLECCICFYPG 178
++ +G+++C +CF PG
Sbjct: 4 VSASELGAIKCQVCFLPG 21
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 87 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQD 185
K ++Y K +KRR E KT+ AR+R V+D
Sbjct: 112 KEEEYKKNKSEYYKRRNEVKTE-EARERRRVRD 143
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 186 KNKYNTPNYRLIVRLSNKDVT 248
K+K TP YRL++ L + D+T
Sbjct: 187 KSKSRTPTYRLMLILGSLDLT 207
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 24.6 bits (51), Expect = 9.7
Identities = 6/18 (33%), Positives = 13/18 (72%)
Frame = -1
Query: 231 ITVQSVGSLECCICFYPG 178
++ +G+++C +CF PG
Sbjct: 16 VSASELGAIKCQVCFLPG 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,373,003
Number of Sequences: 27780
Number of extensions: 110261
Number of successful extensions: 262
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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