Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H09
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    25   1.8  
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    25   1.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   1.8  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   2.4  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   3.1  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    23   4.2  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    23   4.2  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    23   4.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    23   5.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    23   5.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    23   7.3  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    22   9.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    22   9.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   9.6  

>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 72  KVGVGAPSYTAATSRYPRAE 13
           +VG GAP Y AA   Y  AE
Sbjct: 44  RVGAGAPVYLAAVLEYLAAE 63


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 72  KVGVGAPSYTAATSRYPRAE 13
           +VG GAP Y AA   Y  AE
Sbjct: 44  RVGAGAPVYLAAVLEYLAAE 63


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 115 FPDVGVAVEVERDSEGGG 62
           F ++G  V+ ERDS+G G
Sbjct: 81  FEEIGKTVKSERDSDGSG 98


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 99 LPSRSSATVKVGVGAPSYTAATSRYPRA 16
          +PS S+++ K+   +P++  ++S  PR+
Sbjct: 12 MPSNSNSSSKLNAKSPNFIPSSSNIPRS 39


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 210 TRSHAFGPNSTLKSS*QATRPASLRASRLL 121
           T+  AF PNST  +  +  R A+L +S  L
Sbjct: 263 TKLEAFAPNSTFATQKRLRRLATLESSPAL 292


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 196 VWSEFNFEEFVAGDAPGLLTR 134
           +W++ +  EF+A D P  LT+
Sbjct: 92  LWTDESMREFIATDYPWFLTQ 112


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 192 GPNSTLKSS*QATRPASLRASRLLDAFPM*VLPSRSSATVKVGVGAPSYTAATSRYP 22
           G NS+   +  +T  AS+  S   D      LP+ S+ +V V   AP+ +++ + YP
Sbjct: 53  GANSSSSYTSYSTGLASVTESS--DDGASTALPTTSTESVVVTTSAPAASSSATSYP 107


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 208 EITRVWSEFNFEEFVA 161
           E T+ W  FNF +F A
Sbjct: 313 EFTKAWEVFNFMKFTA 328


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 56   APTPTFTVALDLDGNTYIGKASSKREARKE 145
            APT + T    LDG+    K SS+ + +KE
Sbjct: 1221 APTKSSTRQTTLDGSISNTKKSSRTKKKKE 1250


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   ALNSARGYRD-VAAVYDGAPTPTFTVALDLDGNTYIGKASSKREARK 142
           ALN    Y + V  V D A    F  ALD D  T+I  +S   E +K
Sbjct: 678 ALNQIETYDNLVEVVVDSA---RFITALDFDALTFIILSSFSNEFKK 721


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 144 SLRASRLLDAFPM*VLPSRSSATVKVGVGAPSYTAATSR 28
           SL + RL  +FP+    + ++   K  VG+P+++   S+
Sbjct: 269 SLHSDRLWSSFPVSYPLTLANVLAKDEVGSPTWSPTPSK 307


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 41  AVYDGAPTPTFTVALD 88
           AVYDGA T T    LD
Sbjct: 222 AVYDGADTSTNCTTLD 237


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 53  GAPTPTFTVALDLD 94
           G P+ ++TVA+DLD
Sbjct: 74  GRPSISYTVAIDLD 87


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 213  GTRSHAFGPNSTLKSS*QATRPASLRASR 127
            G+ + A GP   +++   AT+P S+ A++
Sbjct: 978  GSTAAARGPRPVVQNKPAATKPVSMPAAK 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,162
Number of Sequences: 5004
Number of extensions: 9415
Number of successful extensions: 31
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)