Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_H09
(213 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0331 - 16878602-16879054 27 2.1
12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231 26 3.6
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601... 26 3.6
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 26 3.6
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 26 3.6
01_05_0689 + 24308932-24309217,24310064-24310273,24311122-243112... 26 3.6
05_07_0153 - 28051496-28051801,28051933-28052271 26 4.8
05_05_0064 + 22063951-22064462,22066344-22066566 26 4.8
03_05_0647 + 26390924-26391259 26 4.8
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200... 26 4.8
07_03_1371 - 26100553-26101767 25 6.3
04_04_0771 - 27968535-27968538,27968721-27968929 25 6.3
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 25 6.3
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 25 6.3
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 25 6.3
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 25 6.3
12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282 25 8.3
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 25 8.3
05_05_0227 - 23449579-23450459,23450574-23450691 25 8.3
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354... 25 8.3
03_01_0433 + 3353255-3353374,3353532-3353828 25 8.3
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 25 8.3
>07_03_0331 - 16878602-16879054
Length = 150
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 118 RFPDVGVAVEVERDSEGGGGRAVIHRRDVAVPSCRIQC 5
R + A E E + EGGGG + + PSC + C
Sbjct: 93 RHQEAAAAAE-EEEEEGGGGAGGELATEASEPSCAMHC 129
>12_01_0850 + 7985289-7985789,7986636-7986888,7987173-7987231
Length = 270
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 122 SKREARKEAGRVACYELFKVEFGPNACDL 208
S+R A K+AGR+A E+ ++ P A L
Sbjct: 198 SQRTATKDAGRIAGLEVLRIINEPTAASL 226
>09_04_0529 +
18356964-18358307,18359829-18359944,18360036-18360133,
18360234-18360418
Length = 580
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 AALNSARGYRDVAAVYDGAPTPTFTVALDLDGN-TYIGKASSKREARKEAGRVA 160
AAL ++RG D+A + D F + G+ T G A RE R+ GR+A
Sbjct: 157 AALGTSRGGFDLARIVDAIERHGFNQVYAVGGDGTMRGAARIHREVRRR-GRLA 209
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 122 SKREARKEAGRVACYELFKVEFGPNACDL 208
S+R A K+AGR+A E+ ++ P A L
Sbjct: 131 SQRTATKDAGRIAGLEVLRIINEPTAASL 159
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 SATVKVGVGAPSYTAATSRYP 22
SATV V GAP+ T+A+SR P
Sbjct: 554 SATVVVKRGAPASTSASSRSP 574
>01_05_0689 +
24308932-24309217,24310064-24310273,24311122-24311270,
24311351-24311627,24312723-24313027
Length = 408
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -3
Query: 163 AGDAPGLLTRLALTRRFPDVGVAVEVERDSEGGGGRAVIHRR 38
AGDA ++ +A F VGVAVE + + GGGG V R
Sbjct: 4 AGDARIVVVAVAA---FVLVGVAVEGKGEGGGGGGVGVCFER 42
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 103 GVAVEVERDSEGGGGRAVIHRRDVAVPSCR 14
GVA E R GGGG AV + PS R
Sbjct: 13 GVAEEDSRSPYGGGGAAVDCTLSLGTPSTR 42
>05_05_0064 + 22063951-22064462,22066344-22066566
Length = 244
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 91 EVERDSEGGGGRAVIHRRDVAVPSCRIQCS 2
E E D+ GGGG HRR SC +CS
Sbjct: 74 EEEEDAGGGGGGVEHHRRK---SSCVSECS 100
>03_05_0647 + 26390924-26391259
Length = 111
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 103 GVAVEVERDSEGGGGRAVIHRR 38
GVAVE D E GGGR V R
Sbjct: 50 GVAVEALLDGEVGGGRGVARWR 71
>02_01_0299 +
2001938-2002510,2002821-2003033,2003129-2003333,
2003485-2003560,2003665-2003800,2003905-2004009,
2004095-2004172,2004264-2004353,2004441-2004506,
2004836-2004892,2004996-2005073,2005165-2005212,
2005330-2005401
Length = 598
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 35 VAAVYDGAPTPTFTVALDLDGNTYIGKASSK-REARKEAG 151
VAA T ALD + GK+SS+ R ARK+ G
Sbjct: 35 VAAGGGAKTTVRVAAALDTEATAKAGKSSSRARRARKDGG 74
>07_03_1371 - 26100553-26101767
Length = 404
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 130 ALTRRFPDVGVAVEVERDSEGGGGRAVI 47
ALTRR + G V VE ++ GGG A +
Sbjct: 278 ALTRRIQNAGTEV-VEAKAKAGGGSATL 304
>04_04_0771 - 27968535-27968538,27968721-27968929
Length = 70
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 166 VAGDAPGLLTRLALTRRFPDVGVAVEVERDSEGGGGRAVI 47
+A G L AL R + VA R GGGGR+++
Sbjct: 1 MASSCWGRLGLAALWHRLRQLSVARRRRRHGGGGGGRSIL 40
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 8 LNSARGYRDVAAVYDGAPTPTF-TVALDL-----DGNTYIGKASSKREARKEAGRV 157
L GY+D V D + TPTF +V L + +G +I KA +RK RV
Sbjct: 660 LGQYEGYKDDPTVPDDSNTPTFASVVLRVHNERWEGVPFILKAGKALSSRKAEVRV 715
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 106 VGVAVEVERDSEGGGGRAVIHRRDVAVPSC 17
VGV VE+ + S G GR V+ R D A SC
Sbjct: 105 VGVGVELRQRSVSGSGR-VVSRED-ATSSC 132
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 8 LNSARGYR-DVAAVYDGAPTPTFTVA 82
L+ A+GY DVA +Y A P+F VA
Sbjct: 202 LDFAKGYSADVAKIYIDATEPSFAVA 227
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 160 GDAPGLLTRLALTRRFPDVGVAVEVERDSEGGGGRAVIHRRD 35
G+A + ++ AL ++ DVGVA +E ++ GG + D
Sbjct: 203 GNAQAVESKAALDKK-EDVGVAEPLEAKADAGGDAGAVSSAD 243
>12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282
Length = 744
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 205 ITRVWSEFNFEEFVAGDAPGLLTRLALTRRFPDVGVAVEV 86
+TR + + P L RL T++ DVGVAV +
Sbjct: 37 VTRAEETIPKSDALLNQFPPKLARLKFTKKSKDVGVAVSL 76
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/49 (26%), Positives = 17/49 (34%)
Frame = -3
Query: 196 VWSEFNFEEFVAGDAPGLLTRLALTRRFPDVGVAVEVERDSEGGGGRAV 50
+W + N GD +R +G AV GG RAV
Sbjct: 253 MWDQINKNGSFVGDGNAAAAATGASRPGSSIGAAVAATTTVAAGGARAV 301
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 100 VAVEVERDSEGGGGRAVIHR 41
V +E R + GGGGRA+ R
Sbjct: 180 VTIEQPRPASGGGGRALTRR 199
>04_04_0237 +
23831949-23832354,23833970-23835166,23835274-23835453,
23835537-23835823,23835912-23836029,23836354-23836483,
23836693-23836861,23836926-23836991,23837466-23837738,
23838131-23838349
Length = 1014
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = -3
Query: 109 DVGVAVEV----ERDSEGGGGRAVIHRRDVAVPSCRI 11
D G AVEV R+ G GGR V+ R + VP+ +
Sbjct: 64 DGGEAVEVGVARRREGGGRGGREVVGRVKLPVPAAAV 100
>03_01_0433 + 3353255-3353374,3353532-3353828
Length = 138
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 99 LPSRSSATVKVGVGAPSYTAATSRYPRAE 13
L SR+SA +VG A Y+AA Y AE
Sbjct: 50 LKSRASAHGRVGATAAVYSAAILEYLTAE 78
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 201 HAFGPNSTLKSS*QATRPASLRASRLLDAFPM 106
HAF P+ L ++ A P+S A+ L A P+
Sbjct: 207 HAFPPDGQLPATAAAASPSSFTAAEALAAPPL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,995,321
Number of Sequences: 37544
Number of extensions: 82341
Number of successful extensions: 407
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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