Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H06
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   0.43 
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   1.7  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   2.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    23   4.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    22   9.3  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    22   9.3  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 104 VITMEDTNELPSLEPSLRNVIEQTSL 181
           V+T EDT E+ S++P+L   +   SL
Sbjct: 148 VLTDEDTEEVASIQPALSTSVSSLSL 173


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 108 ITNLIS*QNFIVNKRKRKHSCTL 40
           +T+ +S  NFI+  RK + SC L
Sbjct: 10  LTSTVSISNFILYNRKYRKSCAL 32


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 180 KDVCSITFLKEGSKDGSSLVSSIVITNLIS*QNFIVNKRK 61
           K++ +I    E  KD S L+SSI +  L S  +F+V + K
Sbjct: 49  KELQAIKIKIEWCKDTSVLLSSICVMLLDSIHDFLVQQGK 88


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
          Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 5  WDFRHEGELHYIN 43
          +DF+HEG++H  N
Sbjct: 14 YDFKHEGKVHLSN 26


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 110 TMEDTNELPSLEPSLRNVIEQTSL 181
           T++DT +   L  SL  VIE+T++
Sbjct: 21  TVKDTLKNKKLSSSLNKVIEETNV 44


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 ITMEDTNELPSLEPSLRNVIEQT 175
           +   D+N +PS+   LR+ ++QT
Sbjct: 283 VLQSDSNHVPSVLTELRSGLDQT 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,721
Number of Sequences: 5004
Number of extensions: 9009
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)