Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_H06
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0211 + 15899017-15901392                                         26   4.9  
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880     26   4.9  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    25   6.5  

>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 21  RGNYIILTCMSAYVCAYL 74
           + NYI+ +C+S Y CAYL
Sbjct: 562 QANYIVASCISRY-CAYL 578


>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
          Length = 237

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 113 MEDTNELPSLEPSLRNVIEQTSLR 184
           M+  +ELPSL P+L+ VI Q + R
Sbjct: 208 MDCYSELPSLAPTLKLVIRQLAAR 231


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 11  FRHEGELHYINVHECLRLRL 70
           F   GEL Y+N+  CL L L
Sbjct: 581 FHRLGELQYLNLSRCLSLNL 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,887,357
Number of Sequences: 37544
Number of extensions: 48601
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)